Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0061
         (506 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62360.1 68416.m07005 expressed protein                             31   0.59 
At1g09320.1 68414.m01043 agenet domain-containing protein contai...    29   1.4  
At2g24680.1 68415.m02947 transcriptional factor B3 family protei...    28   4.2  
At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK...    27   7.3  
At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1) id...    27   7.3  
At1g70110.1 68414.m08068 lectin protein kinase family protein co...    27   7.3  
At5g11320.2 68418.m01322 flavin-containing monooxygenase family ...    27   9.6  
At5g11320.1 68418.m01321 flavin-containing monooxygenase family ...    27   9.6  

>At3g62360.1 68416.m07005 expressed protein
          Length = 1227

 Score = 30.7 bits (66), Expect = 0.59
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +3

Query: 297 GSATSAAFKVKKGGRYQMQVELCNSDGCSSSEGIEIVVADTDGSHL 434
           G+    +  +K GG   + VEL +SDG  S + +  V+  +DGS+L
Sbjct: 138 GAVGGESCLIKNGGPADVNVELLSSDG--SEDPVASVLTSSDGSYL 181


>At1g09320.1 68414.m01043 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 517

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 7/44 (15%)
 Frame = +3

Query: 390 EGIEIVVADTDGSHLRP-------LDYSIGEKINPSSKLREKWW 500
           +GIE +  +TD  H+RP       +D+++G+KIN  +   + WW
Sbjct: 265 DGIEPLKEETDFLHIRPPPPRDEDIDFAVGDKIN--AFYNDGWW 306


>At2g24680.1 68415.m02947 transcriptional factor B3 family protein
           low similarity to reproductive meristem gene 1 from
           [Brassica oleracea var. botrytis] GI:3170424,
           [Arabidopsis thaliana] GI:13604227; contains Pfam
           profile PF02362: B3 DNA binding domain
          Length = 851

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 151 RRSRTCARPSRGSVSWRAAGADGER 77
           + S  CA PSRG+  W+A     ER
Sbjct: 711 KESSICAEPSRGNKKWKATNNRKER 735


>At2g27970.1 68415.m03390 cyclin-dependent kinase, putative / CDK,
           putative similar to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 83

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 106 WRAAGADGERGHREYERYHPMPHNWFYKK 20
           WRA G    RG   Y  + P PH   +++
Sbjct: 41  WRAIGVQQSRGWVHYAIHRPEPHIMLFRR 69


>At2g27960.1 68415.m03389 cyclin-dependent kinase / CDK (CKS1)
           identical to Cks1 protein [Arabidopsis thaliana]
           gi|2274859|emb|CAA03859
          Length = 87

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 106 WRAAGADGERGHREYERYHPMPHNWFYKK 20
           WRA G    RG   Y  + P PH   +++
Sbjct: 41  WRAIGVQQSRGWVHYAVHRPEPHIMLFRR 69


>At1g70110.1 68414.m08068 lectin protein kinase family protein
           contains Pfam domains, PF00138: Legume lectins alpha
           domain, PF00139: Legume lectins beta domain and PF00069:
           Protein kinase domain
          Length = 666

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/13 (76%), Positives = 13/13 (100%)
 Frame = +1

Query: 235 TGDAADNPESCSI 273
           +G+AAD+PESCSI
Sbjct: 640 SGEAADSPESCSI 652


>At5g11320.2 68418.m01322 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 357

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 175 YNQLVTKKDAADVSVNWNVWTGDAADNPESCSIRRKSGAVPAAPHRP 315
           +NQ V K +  D S  WNV T D         +     A P  P+ P
Sbjct: 107 FNQTVEKAEFDDASGLWNVKTQDGVYTSTWLVVATGENAEPVFPNIP 153


>At5g11320.1 68418.m01321 flavin-containing monooxygenase family
           protein / FMO family protein similar to
           flavin-containing monooxygenases YUCCA [gi:16555352],
           YUCCA2 [gi:16555354], and YUCCA3 [gi:16555356] from
           Arabidopsis thaliana
          Length = 411

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 175 YNQLVTKKDAADVSVNWNVWTGDAADNPESCSIRRKSGAVPAAPHRP 315
           +NQ V K +  D S  WNV T D         +     A P  P+ P
Sbjct: 107 FNQTVEKAEFDDASGLWNVKTQDGVYTSTWLVVATGENAEPVFPNIP 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,271
Number of Sequences: 28952
Number of extensions: 175084
Number of successful extensions: 411
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 408
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)