Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0060
(760 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 28 1.3
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar... 27 3.8
SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 5.1
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su... 26 5.1
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 26 5.1
SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomy... 26 6.7
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 26 6.7
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 6.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 8.9
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 8.9
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 578 KRTSSCMHTACFQGTNSTKQVVVFQPSKNIHTAEYTHD 465
KRT S C Q +N+ K ++ + S+N+H + D
Sbjct: 276 KRTKSWKRATCQQLSNAVKAILHLRSSQNLHVQDALFD 313
>SPAC23H3.03c |||nitrogen permease regulator
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 26.6 bits (56), Expect = 3.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +3
Query: 162 YQYVKQYVLPKRDVTRLYFIIYTNSYQ 242
++ + YV+PKR++ + TN YQ
Sbjct: 57 FETISDYVIPKRELCNKTITVCTNHYQ 83
>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 69
Score = 26.2 bits (55), Expect = 5.1
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = -3
Query: 716 QGIIYYLKQFRWLRILPVSIWTKVE-CC*EISQKLQRILAVLQSYLLKRTSSCMH 555
+ +++YL R LRILP+ + + C A+L SYL+++ + +H
Sbjct: 3 RALLFYLWNQRDLRILPIVVSFLINYTCDNKFYSSPSTFALLSSYLIEKRLNFLH 57
>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 26.2 bits (55), Expect = 5.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +2
Query: 443 WFWQNVGHHVYTQRCEY 493
W WQN+G YT+ C++
Sbjct: 75 WNWQNLGISRYTKDCDF 91
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 220 LFTLTHINADSEKAALVKLVQVSGIQ*ISI 309
L +THI D E+ ++KL GI+ I +
Sbjct: 525 LALMTHITTDEEEEPIIKLAYAFGIEDIHV 554
>SPCC1739.06c |||uroporphyrin methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 496
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -3
Query: 743 VFGRSI*KLQGIIYYLKQFRWLRILPVSIWTKVEC 639
VF ++ +L+ ++ L + W R+LPV I +V C
Sbjct: 421 VFLMALHRLEILVQALIESGWPRVLPVCIAERVSC 455
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = -3
Query: 641 CC*EISQKLQRILAVLQSYLLKRTSSCMHTACFQGTNSTKQVVV 510
CC E +K + L V+ +L S C FQ T Q +V
Sbjct: 650 CCYEGDEKDEERLTVISEFLKSCFSGCQDRRSFQITMEDFQAIV 693
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 11 KYRFVFRFVSVHYKIENIRPPKNKY-SVVKRNNH 109
KYRFVF+F S + ++ K KY ++++R++H
Sbjct: 769 KYRFVFKF-SPSQPLSSLGKNKEKYDALLERSSH 801
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 133 IYLLNSVRKDISMSNNMFYLNAMLLVCTLLFTLTHINADSEKAA 264
IY +N DI M+ YL+ LL+ + +H+N +E+ A
Sbjct: 585 IYWING--GDIHMAGQFSYLSNSLLLNVHRYVESHLNGPTERTA 626
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 494 FCLVEKPQPAWWSWCLENKLYACMMMF 574
FCL EKP A S C ++C++ F
Sbjct: 216 FCLEEKPVAARMSRCGHVYCFSCLLRF 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,477,435
Number of Sequences: 5004
Number of extensions: 78614
Number of successful extensions: 216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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