Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0060
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0155 + 22787658-22787930,22788029-22788096,22789600-227899...    44   1e-04
01_06_1235 - 35602548-35602594,35603057-35603060,35603186-356032...    41   0.001
12_01_0499 - 3959843-3960058,3960158-3960235,3960315-3960389,396...    31   1.00 
11_06_0655 - 25923171-25923185,25923208-25923432,25923865-259243...    29   4.0  
09_01_0100 + 1523835-1524611                                           28   9.3  

>05_05_0155 +
           22787658-22787930,22788029-22788096,22789600-22789915,
           22790207-22790323
          Length = 257

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 22/74 (29%), Positives = 37/74 (50%)
 Frame = +3

Query: 276 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 455
           G   G T+ + +C SC YK        +++  +P I VI  NY PP     L +++   +
Sbjct: 96  GAGYGTTVELQFCASCSYKGTAMTMKRMLETSFPGIHVILHNYPPPFPKRVLGKLVPILQ 155

Query: 456 MLVIMCILSGVNIF 497
           +  I  I++G +IF
Sbjct: 156 VGAIATIMAGDHIF 169



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 518 PAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISLNNIPLWSK 658
           P W+     N+      ++   N  +  L SSGAFE+  N   ++SK
Sbjct: 177 PPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAFEVYCNGDLVFSK 223


>01_06_1235 -
           35602548-35602594,35603057-35603060,35603186-35603290,
           35604274-35604589,35605898-35605968,35606076-35606270
          Length = 245

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 20/74 (27%), Positives = 38/74 (51%)
 Frame = +3

Query: 276 GTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRIIGFGK 455
           G + G T+ + +C SC Y+        +++  +P I V+  NY PP     LS+ + F +
Sbjct: 71  GPASGTTVELKFCASCSYRGNAVTVKKMLETSFPGIHVVLENYPPPFPKRALSKAVPFLQ 130

Query: 456 MLVIMCILSGVNIF 497
           +  +  +++G  IF
Sbjct: 131 VGAMATLMAGDQIF 144



 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 518 PAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISLNNIPLWSK 658
           P W+     N+      ++   N  +  L SSGAFE+  N   ++SK
Sbjct: 152 PPWYYSLRANRFGTMATIWLFGNFAQSFLQSSGAFEVYCNGQLVFSK 198


>12_01_0499 -
           3959843-3960058,3960158-3960235,3960315-3960389,
           3960590-3960676,3960764-3960831,3961854-3961941,
           3962041-3962141,3962223-3962343,3962647-3962778,
           3962880-3962969
          Length = 351

 Score = 31.1 bits (67), Expect = 1.00
 Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +3

Query: 339 FEDYAGIIQQKYPEISVIGANYDPPGFNM---YLSRIIGFGKM 458
           FEDYA    + + ++S +GA +DPP  N    +L+ IIG  KM
Sbjct: 294 FEDYA----EAHAKLSNLGAKFDPPKVNEIKDFLTSIIGMEKM 332


>11_06_0655 -
           25923171-25923185,25923208-25923432,25923865-25924324,
           25924330-25924985
          Length = 451

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 494 FCLVEKPQPAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISL 634
           F ++    P  WSWCL    +  + + F+++ +E   +  G F+ SL
Sbjct: 284 FLIINAIPPRNWSWCLSRAYFGVVGLSFVSSKLE---VLYGCFDRSL 327


>09_01_0100 + 1523835-1524611
          Length = 258

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 8   NKYRFVFRFVSVHYKIENIRPP-KNKYSVVKRNNHCESNDLHPF 136
           N Y   F+     +K +++ P     Y+ +KR  HCE+ +L PF
Sbjct: 82  NLYLVAFKVQGKWHKFKDLTPKIAPDYASIKRKKHCEAKNL-PF 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,863,224
Number of Sequences: 37544
Number of extensions: 442893
Number of successful extensions: 1016
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)