Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0060
         (760 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061409-1|AAL28957.1|  198|Drosophila melanogaster LD33828p pro...   100   2e-21
AE014134-842|AAF52202.1|  198|Drosophila melanogaster CG3887-PA ...   100   2e-21

>AY061409-1|AAL28957.1|  198|Drosophila melanogaster LD33828p
           protein.
          Length = 198

 Score =  100 bits (240), Expect = 2e-21
 Identities = 40/81 (49%), Positives = 59/81 (72%)
 Frame = +3

Query: 264 ISKIGTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRII 443
           ++K G ++  TM   YCYSCGY+K FEDY G++ +KYP+I V G NYDPPG N YLS++I
Sbjct: 33  VTKFGQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMI 92

Query: 444 GFGKMLVIMCILSGVNIFAWL 506
              K+++I+ ++S V+ F +L
Sbjct: 93  FALKIIIIVSVVSAVSPFTFL 113



 Score = 82.6 bits (195), Expect = 5e-16
 Identities = 33/47 (70%), Positives = 41/47 (87%)
 Frame = +2

Query: 518 PAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISLNNIPLWSK 658
           P+WWS    NK+YACMM+FFL NM+E QLISSGAFEI+LN++P+WSK
Sbjct: 118 PSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSK 164


>AE014134-842|AAF52202.1|  198|Drosophila melanogaster CG3887-PA
           protein.
          Length = 198

 Score =  100 bits (240), Expect = 2e-21
 Identities = 40/81 (49%), Positives = 59/81 (72%)
 Frame = +3

Query: 264 ISKIGTSVGHTMNIYYCYSCGYKKVFEDYAGIIQQKYPEISVIGANYDPPGFNMYLSRII 443
           ++K G ++  TM   YCYSCGY+K FEDY G++ +KYP+I V G NYDPPG N YLS++I
Sbjct: 33  VTKFGQNIAPTMTFLYCYSCGYRKAFEDYVGLLGEKYPQIQVNGGNYDPPGLNYYLSKMI 92

Query: 444 GFGKMLVIMCILSGVNIFAWL 506
              K+++I+ ++S V+ F +L
Sbjct: 93  FALKIIIIVSVVSAVSPFTFL 113



 Score = 82.6 bits (195), Expect = 5e-16
 Identities = 33/47 (70%), Positives = 41/47 (87%)
 Frame = +2

Query: 518 PAWWSWCLENKLYACMMMFFLANMIEGQLISSGAFEISLNNIPLWSK 658
           P+WWS    NK+YACMM+FFL NM+E QLISSGAFEI+LN++P+WSK
Sbjct: 118 PSWWSHMQANKIYACMMIFFLGNMLEAQLISSGAFEITLNDVPVWSK 164


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,043,912
Number of Sequences: 53049
Number of extensions: 800665
Number of successful extensions: 1769
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1769
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3478915869
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)