Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0059
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    25   8.5  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   8.5  
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    25   8.5  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   8.5  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   8.5  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 610 VDIPEGDEQKLMEAVATVGPVSVAID 687
           +D+P G  + L+ A  T  P SVA+D
Sbjct: 237 IDLPAGPSEVLVIADETCNPESVALD 262


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 138 CSCPACKKRGPFRTSG 91
           C+CP C+K  P  T G
Sbjct: 144 CTCPLCRKEVPHETVG 159


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
            Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 383  QHFRQSGYLVSLSEQNLIDCSEQYGN 460
            QHF + G +     QN+  C EQ  N
Sbjct: 947  QHFGKQGTIFDFHSQNMRQCREQLHN 972


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 336 FPWSLMSVTAPCFLQSTCSGSFTLAGD 256
           +PWS   V    +L     G F LAGD
Sbjct: 399 YPWSQPVVNITDYLSDNGDGHFVLAGD 425


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 689  ASMATETGPTVATASISFCSSPSGMSTKPTSSAPVFLGLYLHLSSTP 549
            +S A  T P + ++++   S+P   ST   +S P+     ++ SSTP
Sbjct: 1646 SSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVN-SSTP 1691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,187
Number of Sequences: 5004
Number of extensions: 55537
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)