Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0058
         (720 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6EGC6 Cluster: Sulfite dehydrogenase; n=1; Pedobacter ...    37   0.58 
UniRef50_A6PKE9 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_A6D1R3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q9AMC0 Cluster: Emmd432; n=41; Streptococcus|Rep: Emmd4...    33   9.4  

>UniRef50_A6EGC6 Cluster: Sulfite dehydrogenase; n=1; Pedobacter sp.
           BAL39|Rep: Sulfite dehydrogenase - Pedobacter sp. BAL39
          Length = 439

 Score = 36.7 bits (81), Expect = 0.58
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +3

Query: 486 WVRRIRRLDEYISRRPKRLKHTLKTKDGKVRQSRRLVTKMDIIT 617
           W+RRI+  D     R +  K+T K KDGK+RQ   ++    IIT
Sbjct: 272 WLRRIKLSDAPFMTREETSKYTEKVKDGKIRQFSFVMDARSIIT 315


>UniRef50_A6PKE9 Cluster: Putative uncharacterized protein; n=1;
           Victivallis vadensis ATCC BAA-548|Rep: Putative
           uncharacterized protein - Victivallis vadensis ATCC
           BAA-548
          Length = 236

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 471 ISGRLWVRRIRRLDEYISRRPKRLKHTLKTKDGKVRQSRRLVTKM 605
           + G +W RRIRR  E+  +R   LKH  ++   +    R+L+  M
Sbjct: 117 VDGSIWQRRIRRTFEFFEKRNLHLKHNFESHVPQRLPGRKLLRAM 161


>UniRef50_A6D1R3 Cluster: Putative uncharacterized protein; n=1;
           Vibrio shilonii AK1|Rep: Putative uncharacterized
           protein - Vibrio shilonii AK1
          Length = 162

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 453 ALRGAAISGRLWVRRIRRLDEYISRRPKRLKHTLKTKDGKVRQSRRLVTK 602
           AL GA +  + WVRR   + ++  R    +KH L+ K   + Q+  +V K
Sbjct: 66  ALDGATLDNQEWVRRKSNVTKHFQRSSWYMKHYLEMKGKNIEQASFIVEK 115


>UniRef50_Q9AMC0 Cluster: Emmd432; n=41; Streptococcus|Rep: Emmd432
           - Streptococcus pyogenes
          Length = 308

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +3

Query: 426 PLIAMWVTGALRGAAISGRLWVRRIRRLDEYISRRPKRLKHTLKTKDGKVRQSRRLVTKM 605
           PL+      ALRG  +S  LW R+++  D+  S   K LK  L+ K+ ++   +  V K+
Sbjct: 29  PLVTEARNQALRGRTVSAELWYRQVQENDQLKSEN-KGLKTDLQEKERELEDLKGDVEKL 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 656,009,771
Number of Sequences: 1657284
Number of extensions: 12283738
Number of successful extensions: 24865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24861
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)