Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0058
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    27   2.7  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    27   2.7  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.7  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   8.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   8.2  

>SPCC16C4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 266

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/19 (52%), Positives = 16/19 (84%)
 Frame = +2

Query: 44  VDNRPYTKKNYAQIIMSLF 100
           ++N  +TK+NYAQ+I SL+
Sbjct: 93  LENSEFTKENYAQMINSLY 111


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
 Frame = -3

Query: 592 KRLDCLTLPSFVFNVCFSL-----LGLL---EIYSSSLRIRLTQSLPDIAAPRR 455
           K ++CL  PSF+ N  FS+     LG L   +   SS  ++  QS   I A +R
Sbjct: 98  KVINCLRFPSFLINFIFSVYQTSALGFLCLGQYLRSSAMVQAGQSFSHIVASKR 151


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 235 GTMQSRCVYINLGLLLEVKPGKIMYLLR 152
           G ++SRCV ++   L  +K   ++Y+LR
Sbjct: 753 GLLRSRCVILSTNSLTVLKEASMIYMLR 780


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 212 NTPTLHGTKKSV 247
           +TPTLHGT KSV
Sbjct: 497 HTPTLHGTDKSV 508


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 361 IFDLILNCEKKNFLKNAFRRFYFILLTSDEACHSINI*NR 242
           +FD I+  EKK   ++  RRF+  ++ + E CH   I +R
Sbjct: 118 LFDYIV--EKKRMTEDEGRRFFQQIICAIEYCHRHKIVHR 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,420
Number of Sequences: 5004
Number of extensions: 55738
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)