Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0058
         (720 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-2|AAN84846.1|  806|Caenorhabditis elegans Prion-like-(q/n...    31   0.63 
U97194-1|AAK68236.1|  788|Caenorhabditis elegans Prion-like-(q/n...    31   0.63 
AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative MAP-...    31   0.63 
U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine rece...    28   5.8  

>U97194-2|AAN84846.1|  806|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform b protein.
          Length = 806

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 652 PCRSPVSYVAHEVIISIFVTKRLDCL--TLPSFVFNVCFSLLGLLEIYSSSLRIRLTQSL 479
           P ++P+  V  ++      TK  D +  T  S   +   +L+G+ ++ SSS     T  +
Sbjct: 501 PIKTPIGNVYEDLSDDDSETKPTDLVLKTPSSSASSAVATLMGIAQV-SSSTTSATTSVV 559

Query: 478 PDIAAPRRAPVTHMAIKGLINP 413
           P + A R  P T ++ K  INP
Sbjct: 560 PPVGAQRSTPATPVSAKIGINP 581


>U97194-1|AAK68236.1|  788|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
           isoform a protein.
          Length = 788

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 652 PCRSPVSYVAHEVIISIFVTKRLDCL--TLPSFVFNVCFSLLGLLEIYSSSLRIRLTQSL 479
           P ++P+  V  ++      TK  D +  T  S   +   +L+G+ ++ SSS     T  +
Sbjct: 483 PIKTPIGNVYEDLSDDDSETKPTDLVLKTPSSSASSAVATLMGIAQV-SSSTTSATTSVV 541

Query: 478 PDIAAPRRAPVTHMAIKGLINP 413
           P + A R  P T ++ K  INP
Sbjct: 542 PPVGAQRSTPATPVSAKIGINP 563


>AF170425-1|AAF89696.1|  788|Caenorhabditis elegans putative
           MAP-like protein protein.
          Length = 788

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 652 PCRSPVSYVAHEVIISIFVTKRLDCL--TLPSFVFNVCFSLLGLLEIYSSSLRIRLTQSL 479
           P ++P+  V  ++      TK  D +  T  S   +   +L+G+ ++ SSS     T  +
Sbjct: 483 PIKTPIGNVYEDLSDDDSETKPTDLVLKTPSSSASSAVATLMGIAQV-SSSTTSATTSVV 541

Query: 478 PDIAAPRRAPVTHMAIKGLINP 413
           P + A R  P T ++ K  INP
Sbjct: 542 PPVGAQRSTPATPVSAKIGINP 563


>U64840-4|AAB04962.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 68 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 574 TLPSFVFNVCFS-LLGLLEIYSSSLRIRLTQ 485
           ++PSF+  +CF  LLG+ ++Y++S   RL Q
Sbjct: 29  SIPSFILLICFQFLLGISKVYANSF-YRLVQ 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,490,983
Number of Sequences: 27780
Number of extensions: 302586
Number of successful extensions: 602
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)