Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0058
         (720 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.13 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.13 
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.9  

>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 173 EDNVSTSNCYGILFTKSSFLNICSQISS**FEHNFSLYK 57
           E +VS+   +G+LF   SFL   +++    F H + +Y+
Sbjct: 10  ESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYE 48


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.13
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -2

Query: 173 EDNVSTSNCYGILFTKSSFLNICSQISS**FEHNFSLYK 57
           E +VS+   +G+LF   SFL   +++    F H + +Y+
Sbjct: 10  ESDVSSCVIFGVLFVLFSFLRTRTKLQPTYFHHTYIIYE 48


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 55  TLYKEKLCSNHYELICEQILRNEDLVNNIP*QFEV 159
           TL+   L S     +  +ILR+E+L  N   +F++
Sbjct: 273 TLFFHPLSSRREFAVSTRILRDENLSQNSYHEFQI 307


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,676
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)