Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0058
         (720 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g17000.1 68415.m01960 mechanosensitive ion channel domain-con...    30   1.8  
At5g49020.2 68418.m06066 protein arginine N-methyltransferase fa...    27   9.5  
At5g49020.1 68418.m06065 protein arginine N-methyltransferase fa...    27   9.5  

>At2g17000.1 68415.m01960 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 849

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = -3

Query: 331 KNFLKNAFRRFYFILLTSDEACHSINI*NRFFGTMQSRCVYINLGLLLEVKPGKIMYLLR 152
           KN+L NAFR    + LT ++   ++N  +     + +  + +   +LLE+   K  YLL 
Sbjct: 576 KNWLVNAFRERRALALTLNDTKTAVNKLHHMISFLTAIVIIVIWLILLEIATSK--YLLF 633

Query: 151 IVMEYYLLSLHF 116
           +  +  LL+  F
Sbjct: 634 LTSQVVLLAFMF 645


>At5g49020.2 68418.m06066 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 526

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 334 FHSLELSRKCT---CTKVHALACISDIKIEG 417
           F+ +++  K T   CT++H LAC  D+  +G
Sbjct: 369 FYEIDIPLKFTASVCTRIHGLACWFDVLFDG 399


>At5g49020.1 68418.m06065 protein arginine N-methyltransferase
           family protein similar to protein arginine
           methyltransferase [Mus musculus] GI:5257221
          Length = 528

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 334 FHSLELSRKCT---CTKVHALACISDIKIEG 417
           F+ +++  K T   CT++H LAC  D+  +G
Sbjct: 371 FYEIDIPLKFTASVCTRIHGLACWFDVLFDG 401


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,117
Number of Sequences: 28952
Number of extensions: 268473
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)