Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0057
         (776 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    26   0.34 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    25   0.60 
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   1.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   2.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   7.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.7  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +1

Query: 532 DQSSARAKTFLSTAQVVDD-QVFAIVSDEKVIKELEAEDEDVVLFKNFEEKRVKY 693
           D S + A   +  AQ+V+  Q   I+S+++++ E +  D  V LFK F++++  Y
Sbjct: 389 DSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADC-DFVVKLFKTFKDRKYLY 442


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = -3

Query: 615 LIADNSKYLVINNLSS*KES----FGSG*ALVRKETKYNKVLASISSLACSAEVTSTAG 451
           L  D+ +  +IN L S   S    F +  ALV K++K+N V    S+LA    + + AG
Sbjct: 232 LEGDDQQRAIINTLLSISASCVIAFATS-ALVSKDSKFNMVHIQNSTLAGGVAIGTAAG 289


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -2

Query: 457 SRGASLLLQPTDDVISLTTT*IVDRTAIPEEFESRVSSYTVALGEILFLSC 305
           ++G  L   P   +  LTT  ++ +  IP+E     S YT  + +I    C
Sbjct: 270 AKGGKLACPPAIFIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDC 320


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -3

Query: 270 SASFVVPWRIPVPEICSGRTMEHRIQLKCTP 178
           S+   + W  P+ EI     +  R +++C P
Sbjct: 432 SSELSISWDAPITEIGGDSDLVERYEVRCYP 462


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 237 VPEICSGRTMEHRIQLKCTPWL*LQFQS 154
           +P++CSG    + I L   P L L F++
Sbjct: 238 IPQVCSGNCKLNDILLTVRPHLELTFEN 265


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 237 VPEICSGRTMEHRIQLKCTPWL*LQFQS 154
           +P++CSG    + I L   P L L F++
Sbjct: 238 IPQVCSGNCKLNDILLTVRPHLELTFEN 265


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -3

Query: 519 KYNKVL-ASISSLACSAEVTSTA 454
           KY   L A   SLAC+AE +S A
Sbjct: 337 KYRAALFAKFPSLACAAEPSSDA 359


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 273  SSASFVVPWRIPVPEICSG 217
            SS+  ++ W  P+PE+  G
Sbjct: 1019 SSSEILITWSPPLPELRHG 1037


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -3

Query: 273  SSASFVVPWRIPVPEICSG 217
            SS+  ++ W  P+PE+  G
Sbjct: 1015 SSSEILITWSPPLPELRHG 1033


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,086
Number of Sequences: 438
Number of extensions: 3602
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)