Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0056
(702 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 110 4e-23
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 109 5e-23
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 107 3e-22
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 107 3e-22
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 105 8e-22
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 105 8e-22
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 105 8e-22
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 105 1e-21
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 104 2e-21
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 101 1e-20
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 100 3e-20
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 99 9e-20
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 99 9e-20
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 98 2e-19
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 97 4e-19
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 96 6e-19
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 96 8e-19
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 95 1e-18
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 95 1e-18
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 95 1e-18
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 95 1e-18
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 94 3e-18
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 93 5e-18
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 92 1e-17
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 89 1e-16
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 88 2e-16
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 87 4e-16
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 87 5e-16
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 87 5e-16
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 86 7e-16
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 85 1e-15
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 81 3e-14
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 81 3e-14
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 80 6e-14
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 78 2e-13
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 75 1e-12
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 75 2e-12
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 74 4e-12
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 74 4e-12
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 74 4e-12
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 74 4e-12
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 73 5e-12
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 73 7e-12
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 73 9e-12
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 73 9e-12
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 72 2e-11
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 71 2e-11
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 71 4e-11
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 70 5e-11
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 69 8e-11
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 69 8e-11
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 67 3e-10
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 67 5e-10
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 66 6e-10
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 66 6e-10
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 66 8e-10
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 66 1e-09
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 66 1e-09
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 66 1e-09
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 65 1e-09
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 65 1e-09
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 64 2e-09
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 64 2e-09
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 64 3e-09
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 64 4e-09
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 64 4e-09
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 63 6e-09
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 61 2e-08
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 61 2e-08
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 61 3e-08
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 60 4e-08
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 60 4e-08
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 60 5e-08
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 60 7e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 9e-08
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 9e-08
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 59 1e-07
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 59 1e-07
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 59 1e-07
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 58 2e-07
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 58 3e-07
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 57 4e-07
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 57 4e-07
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 57 5e-07
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 57 5e-07
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 56 8e-07
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 56 8e-07
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 56 8e-07
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 54 3e-06
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 52 1e-05
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 52 2e-05
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 51 3e-05
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 50 4e-05
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 50 7e-05
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 48 2e-04
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 46 0.001
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 45 0.002
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 44 0.004
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 41 0.026
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 41 0.034
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 40 0.045
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 38 0.18
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 36 0.73
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 36 1.3
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 36 1.3
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 36 1.3
UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1; Pi... 34 2.9
UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4; C... 34 3.9
UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 33 5.1
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 33 5.1
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 110 bits (264), Expect = 4e-23
Identities = 49/53 (92%), Positives = 52/53 (98%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF FFGHPEVYILILPGFGIIS
Sbjct: 187 AGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILILPGFGIIS 239
Score = 89.4 bits (212), Expect = 7e-17
Identities = 42/81 (51%), Positives = 57/81 (70%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG+ SG++G S+ L+IR ELG PGSLIG+DQIYN+IVT+HA N
Sbjct: 6 FGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNW 65
Query: 182 LVPLILGAPDIAFPRINNIRF 244
L+PL+LG+PD++FPR+NN+ F
Sbjct: 66 LIPLMLGSPDMSFPRMNNMSF 86
Score = 56.4 bits (130), Expect = 6e-07
Identities = 27/37 (72%), Positives = 28/37 (75%)
Frame = +1
Query: 298 GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 105 GVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASS 141
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 109 bits (263), Expect = 5e-23
Identities = 51/64 (79%), Positives = 53/64 (82%)
Frame = +3
Query: 510 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 689
AF AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGF
Sbjct: 195 AFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGF 254
Query: 690 GIIS 701
GIIS
Sbjct: 255 GIIS 258
Score = 74.1 bits (174), Expect = 3e-12
Identities = 36/83 (43%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
FG +G++GT +LIR EL PG I G+ Q+YN ++TAHA
Sbjct: 23 FGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFG 82
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N VP+++GAPD+AFPR+NNI F
Sbjct: 83 NWFVPILIGAPDMAFPRLNNISF 105
Score = 64.1 bits (149), Expect = 3e-09
Identities = 34/72 (47%), Positives = 43/72 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE G+GTG TVYPPLS +H G +VDLAIFSLHL+G+SS
Sbjct: 120 LVEVGSGTGWTVYPPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGM 179
Query: 466 SFDQLPLFV*AV 501
+ +LPLFV +V
Sbjct: 180 TMHRLPLFVWSV 191
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 107 bits (256), Expect = 3e-22
Identities = 48/53 (90%), Positives = 50/53 (94%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFGIIS
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGIIS 255
Score = 94.3 bits (224), Expect = 3e-18
Identities = 45/81 (55%), Positives = 56/81 (69%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA N
Sbjct: 22 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNW 81
Query: 182 LVPLILGAPDIAFPRINNIRF 244
LVPL++GAPD+AFPR+NN+ F
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSF 102
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/71 (54%), Positives = 42/71 (59%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS S
Sbjct: 118 VEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTIS 177
Query: 469 FDQLPLFV*AV 501
Q PLFV AV
Sbjct: 178 QYQTPLFVWAV 188
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 107 bits (256), Expect = 3e-22
Identities = 46/53 (86%), Positives = 51/53 (96%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF FFGHPEVYILI+PGFG++S
Sbjct: 203 AGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILIIPGFGMVS 255
Score = 73.7 bits (173), Expect = 4e-12
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVP+++GAPD+AFPR+NNI F
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISF 102
Score = 67.3 bits (157), Expect = 3e-10
Identities = 37/71 (52%), Positives = 42/71 (59%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS +
Sbjct: 118 VEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMT 177
Query: 469 FDQLPLFV*AV 501
+LPLFV A+
Sbjct: 178 LHKLPLFVWAI 188
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 105 bits (253), Expect = 8e-22
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 204 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 256
Score = 97.1 bits (231), Expect = 4e-19
Identities = 47/81 (58%), Positives = 57/81 (70%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG +G+IGT+L LLIRAELG PG+L+GDDQIYN IVTAHA N
Sbjct: 23 FGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 82
Query: 182 LVPLILGAPDIAFPRINNIRF 244
LVPL++GAPD+AFPR+NN+ F
Sbjct: 83 LVPLMIGAPDMAFPRMNNMSF 103
Score = 71.7 bits (168), Expect = 2e-11
Identities = 40/71 (56%), Positives = 43/71 (60%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
VE GAGTG TVYPPL+ N+AH G SVDLAIFSLHLAGISS S
Sbjct: 119 VEAGAGTGWTVYPPLAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAIS 178
Query: 469 FDQLPLFV*AV 501
Q PLFV +V
Sbjct: 179 QYQTPLFVWSV 189
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 105 bits (253), Expect = 8e-22
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 255
Score = 94.3 bits (224), Expect = 3e-18
Identities = 45/81 (55%), Positives = 56/81 (69%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA N
Sbjct: 22 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNW 81
Query: 182 LVPLILGAPDIAFPRINNIRF 244
LVPL++GAPD+AFPR+NN+ F
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSF 102
Score = 68.5 bits (160), Expect = 1e-10
Identities = 37/71 (52%), Positives = 42/71 (59%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
VE GAGTG TVYPPL+ N+AH G SVDL IFSLHLAG+SS +
Sbjct: 118 VEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAIT 177
Query: 469 FDQLPLFV*AV 501
Q PLFV +V
Sbjct: 178 QYQTPLFVWSV 188
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 105 bits (253), Expect = 8e-22
Identities = 47/53 (88%), Positives = 50/53 (94%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF FFGHPEVYILILPGFG+IS
Sbjct: 203 AAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMIS 255
Score = 93.1 bits (221), Expect = 6e-18
Identities = 44/81 (54%), Positives = 56/81 (69%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG +G++GT+L LLIRAELG PG+L+G+D IYN IVTAHA N
Sbjct: 22 FGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 81
Query: 182 LVPLILGAPDIAFPRINNIRF 244
LVPL++GAPD+AFPR+NN+ F
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSF 102
Score = 66.1 bits (154), Expect = 8e-10
Identities = 36/72 (50%), Positives = 42/72 (58%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE GAGTG TVYPPL+ N +H G SVDL IFSLHLAG+SS
Sbjct: 117 MVEAGAGTGWTVYPPLAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAM 176
Query: 466 SFDQLPLFV*AV 501
+ Q PLFV +V
Sbjct: 177 TQYQTPLFVWSV 188
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 105 bits (252), Expect = 1e-21
Identities = 49/64 (76%), Positives = 52/64 (81%)
Frame = +3
Query: 510 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 689
AF AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF FFGHPEVYILILPGF
Sbjct: 200 AFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILILPGF 259
Query: 690 GIIS 701
G+IS
Sbjct: 260 GMIS 263
Score = 74.5 bits (175), Expect = 2e-12
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
FG SG++G + +LIR EL P + L+G+ QIYN ++TAHA
Sbjct: 28 FGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFG 87
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVP+++G+PD+AFPR+NNI F
Sbjct: 88 NWLVPIMIGSPDMAFPRLNNISF 110
Score = 61.3 bits (142), Expect = 2e-08
Identities = 33/69 (47%), Positives = 40/69 (57%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE G GTG TVYPPLSS +H G +VDLAIFSLH++G SS
Sbjct: 125 LVEVGVGTGWTVYPPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQ 184
Query: 466 SFDQLPLFV 492
S ++PLFV
Sbjct: 185 SMYRIPLFV 193
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 104 bits (250), Expect = 2e-21
Identities = 52/81 (64%), Positives = 59/81 (72%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FGI +G++GTSL LLIRAELG PGSLIGDDQIYNTIVTAHA N
Sbjct: 19 FGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNW 78
Query: 182 LVPLILGAPDIAFPRINNIRF 244
LVPL+LGAPD+AFPR+NN+ F
Sbjct: 79 LVPLMLGAPDMAFPRMNNMSF 99
Score = 93.5 bits (222), Expect = 5e-18
Identities = 50/74 (67%), Positives = 51/74 (68%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 114 IVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNL 173
Query: 466 SFDQLPLFV*AVGI 507
SFDQ+PLFV AVGI
Sbjct: 174 SFDQMPLFVWAVGI 187
Score = 85.8 bits (203), Expect = 9e-16
Identities = 39/52 (75%), Positives = 42/52 (80%)
Frame = +3
Query: 510 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEV 665
AF AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHP++
Sbjct: 189 AFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 101 bits (243), Expect = 1e-20
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 204 AGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILIIPGFGIIS 256
Score = 71.3 bits (167), Expect = 2e-11
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 178
+ + +G+IGT+ +LIR EL PG I D+Q+YN+I+TAHA N
Sbjct: 22 YALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGN 81
Query: 179 *LVPLILGAPDIAFPRINNIRF 244
L+PL LG PD+ FPR+NNI +
Sbjct: 82 FLLPLGLGGPDMGFPRLNNISY 103
Score = 60.9 bits (141), Expect = 3e-08
Identities = 28/40 (70%), Positives = 32/40 (80%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
+ENG GTG T+YPPLS +H G SVDLAIF LHL+GISS
Sbjct: 119 IENGVGTGWTLYPPLSGIQSHSGPSVDLAIFGLHLSGISS 158
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 100 bits (240), Expect = 3e-20
Identities = 43/53 (81%), Positives = 49/53 (92%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AGAIT+LLTDRN T+FFDPAGGGDPIL+QH+F FFGHPEVYI+ILP FG+IS
Sbjct: 309 AGAITMLLTDRNFGTTFFDPAGGGDPILFQHIFWFFGHPEVYIVILPAFGVIS 361
Score = 46.8 bits (106), Expect = 5e-04
Identities = 23/72 (31%), Positives = 37/72 (51%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+++ GAG G T YPP+S+ R+VD AIF++H++G SS
Sbjct: 223 MIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGASSILGSINFITTFLNMRAPGM 282
Query: 466 SFDQLPLFV*AV 501
+ ++PLF +V
Sbjct: 283 TLHKVPLFAWSV 294
Score = 44.4 bits (100), Expect = 0.003
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 50 RAELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFP 223
+A LG L G D ++N ++T H N +PL++GAPD+AFP
Sbjct: 142 QALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFP 201
Query: 224 RINNIRF 244
R+NN+ +
Sbjct: 202 RLNNLSY 208
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 99.1 bits (236), Expect = 9e-20
Identities = 53/88 (60%), Positives = 60/88 (68%)
Frame = -1
Query: 264 KGGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SS 85
K GG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+ L I S
Sbjct: 126 KEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSF 184
Query: 84 PINDPGFPNSARIKSLKDVPIIPDQIPK 1
PI PG PNSARIKSL DVP +P PK
Sbjct: 185 PIKLPGCPNSARIKSLSDVPTMPAHAPK 212
Score = 68.9 bits (161), Expect = 1e-10
Identities = 32/44 (72%), Positives = 38/44 (86%)
Frame = -3
Query: 640 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNA 509
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K A
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMA 43
Score = 68.1 bits (159), Expect = 2e-10
Identities = 39/82 (47%), Positives = 45/82 (54%)
Frame = -2
Query: 500 TAHTNKGN*SNDILFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG* 321
T TN G S I +R I+E PAKC+EKI STD P CAI SGG
Sbjct: 47 TDQTNSGMRSMVIPADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGY 106
Query: 320 TVHPVPAPFSTILLEINNIREG 255
TVHPVP P STI L + ++EG
Sbjct: 107 TVHPVPTPLSTIPLNKSKVKEG 128
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 99.1 bits (236), Expect = 9e-20
Identities = 45/53 (84%), Positives = 49/53 (92%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF FFGHPEVYILI+PGFGIIS
Sbjct: 230 AAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGIIS 282
Score = 71.3 bits (167), Expect = 2e-11
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 178
F + SG++GT+ +LIR EL PG I D+Q+YN+I+T+H N
Sbjct: 48 FALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGN 107
Query: 179 *LVPLILGAPDIAFPRINNIRF 244
L+P+++G PD+AFPR+NN+ +
Sbjct: 108 FLLPILIGGPDMAFPRLNNVSY 129
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/41 (63%), Positives = 30/41 (73%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
I+ENG GTG T+YPPLS +H VDL IF LHL+GISS
Sbjct: 144 IIENGVGTGWTLYPPLSGIQSHSSMGVDLGIFGLHLSGISS 184
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 97.9 bits (233), Expect = 2e-19
Identities = 42/53 (79%), Positives = 47/53 (88%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A AIT+LL DRN NTSF+DP GGGD +LYQHLF FFGHPEVYILILPGFG++S
Sbjct: 207 AAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILILPGFGLVS 259
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
FG+ +G + L +L+R EL PG L G+ YN I T H
Sbjct: 24 FGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFG 83
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N VP+++GAPD++FPR+NN F
Sbjct: 84 NYFVPILIGAPDMSFPRLNNFSF 106
Score = 57.6 bits (133), Expect = 3e-07
Identities = 33/72 (45%), Positives = 36/72 (50%)
Frame = +1
Query: 292 ENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSF 471
E G GTG TVYPPLSS +H G SVDL IFS HL GI S
Sbjct: 123 EGGPGTGWTVYPPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFN 182
Query: 472 DQLPLFV*AVGI 507
LPLFV +V +
Sbjct: 183 KDLPLFVWSVAV 194
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 97.1 bits (231), Expect = 4e-19
Identities = 45/64 (70%), Positives = 49/64 (76%)
Frame = +3
Query: 510 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 689
AF A AIT+LLTDRN T+F+D AGGGDP LYQHLF FFGHPEVYI+ILPGF
Sbjct: 235 AFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELYQHLFWFFGHPEVYIMILPGF 294
Query: 690 GIIS 701
GIIS
Sbjct: 295 GIIS 298
Score = 52.0 bits (119), Expect = 1e-05
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPG-------SLIGD------DQIY---NTIVTAHAXXX 133
F I +GIIG ++ L+RAEL PG + D DQ Y N ++TAH
Sbjct: 46 FAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWNVLITAHGLIM 105
Query: 134 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 244
N VP+++GAPD+AFPR+NNI F
Sbjct: 106 VFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISF 142
Score = 50.0 bits (114), Expect = 6e-05
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = +1
Query: 295 NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFD 474
NGAGTG TVY PLS++ G +VD+AI SLH+AG SS +
Sbjct: 164 NGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMTLH 222
Query: 475 QLPLFV*AV 501
++PLFV +V
Sbjct: 223 KMPLFVWSV 231
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 96.3 bits (229), Expect = 6e-19
Identities = 42/50 (84%), Positives = 47/50 (94%)
Frame = +3
Query: 552 ITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
IT++LTDRN NTSFF+ AGGGDPIL+QHLF FFGHPEVYILI+PGFGIIS
Sbjct: 232 ITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILIIPGFGIIS 281
Score = 75.4 bits (177), Expect = 1e-12
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 178
F + SG++GT+ +LIR EL PG I ++Q+YN+I+TAHA N
Sbjct: 50 FALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGN 109
Query: 179 *LVPLILGAPDIAFPRINNIRF 244
L+PL++G PD+AFPR+NNI F
Sbjct: 110 FLMPLMIGGPDMAFPRLNNISF 131
Score = 53.2 bits (122), Expect = 6e-06
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 4/45 (8%)
Frame = +1
Query: 286 IVENGAGTG*TV----YPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
I+E G GTG T+ YPPLS +H G SVDLAIF+LHL+G+SS
Sbjct: 146 IIEGGVGTGWTLLKDKYPPLSGLQSHSGPSVDLAIFALHLSGVSS 190
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 95.9 bits (228), Expect = 8e-19
Identities = 43/45 (95%), Positives = 44/45 (97%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILI 677
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF FFGHPEVYILI
Sbjct: 176 AGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
Score = 95.1 bits (226), Expect = 1e-18
Identities = 46/75 (61%), Positives = 53/75 (70%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
++GTSL LLIR ELG PGSLIGDDQIYNTIVTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 200 GAPDIAFPRINNIRF 244
GAPD+AFPR+NN+ F
Sbjct: 61 GAPDMAFPRMNNMSF 75
Score = 93.1 bits (221), Expect = 6e-18
Identities = 49/74 (66%), Positives = 51/74 (68%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 90 IVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRINKM 149
Query: 466 SFDQLPLFV*AVGI 507
SFDQ+PLF+ AVGI
Sbjct: 150 SFDQMPLFIWAVGI 163
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 95.5 bits (227), Expect = 1e-18
Identities = 45/81 (55%), Positives = 55/81 (67%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FGI SG++GTSL L+IR ELG PGSL+ DDQ+YN +VTAH N
Sbjct: 6 FGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNW 65
Query: 182 LVPLILGAPDIAFPRINNIRF 244
LVPL+LGAPD+AFPR+NN+ F
Sbjct: 66 LVPLMLGAPDMAFPRMNNMSF 86
Score = 33.1 bits (72), Expect = 6.8
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 355 GRSVDLAIFSLHLAGISS 408
G SVDLAIF LHLAG+SS
Sbjct: 122 GPSVDLAIFPLHLAGVSS 139
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 95.1 bits (226), Expect = 1e-18
Identities = 40/53 (75%), Positives = 47/53 (88%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A IT+LL DRN T+FF+P+GGGDPIL+QHLF FFGHPEVY+LILPGFGI+S
Sbjct: 293 ASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLILPGFGIVS 345
Score = 42.7 bits (96), Expect = 0.008
Identities = 24/79 (30%), Positives = 35/79 (44%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG+ G IG L LLIR L +P + +YN +VT H N
Sbjct: 120 FGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNY 179
Query: 182 LVPLILGAPDIAFPRINNI 238
+P+ L D+ PR+N++
Sbjct: 180 FLPIFLCLDDLLLPRLNSL 198
Score = 39.1 bits (87), Expect = 0.10
Identities = 21/37 (56%), Positives = 24/37 (64%)
Frame = +1
Query: 298 GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
G G G T+YPPLS G VD +FSLHLAG+SS
Sbjct: 217 GCGIGWTLYPPLSI-WEGSGFGVDYLMFSLHLAGVSS 252
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 95.1 bits (226), Expect = 1e-18
Identities = 46/80 (57%), Positives = 55/80 (68%)
Frame = +2
Query: 5 GI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 184
GI SG+IGT+L LLIR ELG PGS IG+DQ+YN +VTAHA N L
Sbjct: 6 GIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWL 65
Query: 185 VPLILGAPDIAFPRINNIRF 244
VPL+LGAPD+AFPR+NN+ F
Sbjct: 66 VPLMLGAPDMAFPRLNNMSF 85
Score = 71.3 bits (167), Expect = 2e-11
Identities = 31/33 (93%), Positives = 32/33 (96%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 641
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 186 AGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/40 (82%), Positives = 35/40 (87%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 101 VESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSS 140
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 95.1 bits (226), Expect = 1e-18
Identities = 43/64 (67%), Positives = 49/64 (76%)
Frame = +3
Query: 510 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 689
AF + IT+LL DRN NTSFF+ +GGGDPILY+HLF FFGHPEVYILI+PGF
Sbjct: 193 AFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILIIPGF 252
Query: 690 GIIS 701
GIIS
Sbjct: 253 GIIS 256
Score = 66.5 bits (155), Expect = 6e-10
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 187
SG+ GT++ L+IR EL PGS L G+ Q++N +V HA N L+
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLL 84
Query: 188 PLILGAPDIAFPRINNIRF 244
PL++GA D AFPRINNI F
Sbjct: 85 PLMIGATDTAFPRINNIAF 103
Score = 66.5 bits (155), Expect = 6e-10
Identities = 37/74 (50%), Positives = 44/74 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 118 LVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGM 177
Query: 466 SFDQLPLFV*AVGI 507
+ +LPLFV ++ I
Sbjct: 178 TMHKLPLFVWSIFI 191
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 93.9 bits (223), Expect = 3e-18
Identities = 44/81 (54%), Positives = 56/81 (69%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG +G++GT+L LLIRAEL PG+L+GDDQIYN IVTAHA N
Sbjct: 11 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 70
Query: 182 LVPLILGAPDIAFPRINNIRF 244
L+PL++GAPD+AFPR+NN+ F
Sbjct: 71 LIPLMIGAPDMAFPRMNNMSF 91
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/71 (54%), Positives = 42/71 (59%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
+E GAGTG TVYPPL+ N+AH G SVDL IFSLHLAGISS S
Sbjct: 107 IEAGAGTGWTVYPPLAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAIS 166
Query: 469 FDQLPLFV*AV 501
Q PLFV AV
Sbjct: 167 QYQTPLFVWAV 177
Score = 38.3 bits (85), Expect = 0.18
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDP 602
A IT+LLTDRNLNT+FFDP
Sbjct: 192 AAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 93.5 bits (222), Expect = 5e-18
Identities = 42/64 (65%), Positives = 47/64 (73%)
Frame = +3
Query: 510 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGF 689
AF + IT+LL DRN NTSFF+ AGGGDPI YQH F FFGHPEVYILI+PGF
Sbjct: 193 AFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILIIPGF 252
Query: 690 GIIS 701
GI+S
Sbjct: 253 GIVS 256
Score = 69.3 bits (162), Expect = 8e-11
Identities = 39/74 (52%), Positives = 44/74 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE+GAGTG TVYPPLSS AH G SVDLAIFSLHL ISS
Sbjct: 118 LVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGM 177
Query: 466 SFDQLPLFV*AVGI 507
S ++PLFV A+ I
Sbjct: 178 SMHKMPLFVWAIFI 191
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/79 (37%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 187
SG+ G+++ ++IR EL PGS L G+ Q++N +V HA N ++
Sbjct: 25 SGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNYML 84
Query: 188 PLILGAPDIAFPRINNIRF 244
PL++GA D++FPRIN+I F
Sbjct: 85 PLMIGATDMSFPRINSIGF 103
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 91.9 bits (218), Expect = 1e-17
Identities = 47/81 (58%), Positives = 57/81 (70%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG +G+IGT+L LLIRAELG PG+L+GDDQ N IVTAHA N
Sbjct: 23 FGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNW 82
Query: 182 LVPLILGAPDIAFPRINNIRF 244
LVPL++GAPD+AFPR+NN+ F
Sbjct: 83 LVPLMIGAPDMAFPRMNNMSF 103
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 88.6 bits (210), Expect = 1e-16
Identities = 42/81 (51%), Positives = 52/81 (64%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG SG IGT+ +LIR EL +PGS++GDD +YN IVTAHA N
Sbjct: 23 FGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNW 82
Query: 182 LVPLILGAPDIAFPRINNIRF 244
VPL++GAPD+AFPR+NNI F
Sbjct: 83 FVPLMIGAPDMAFPRLNNISF 103
Score = 72.5 bits (170), Expect = 9e-12
Identities = 32/37 (86%), Positives = 34/37 (91%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 653
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF FFG
Sbjct: 204 AGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
Score = 68.1 bits (159), Expect = 2e-10
Identities = 36/72 (50%), Positives = 44/72 (61%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE GAGTG TVYPPL+S AH G SVD+AIFSLHLAG+SS
Sbjct: 118 LVEQGAGTGWTVYPPLASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGM 177
Query: 466 SFDQLPLFV*AV 501
+ ++PLFV +V
Sbjct: 178 TMSRIPLFVWSV 189
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 88.2 bits (209), Expect = 2e-16
Identities = 38/53 (71%), Positives = 45/53 (84%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF FFGHPEVYILILP FG+IS
Sbjct: 206 AAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILILPAFGVIS 258
Score = 49.2 bits (112), Expect = 1e-04
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +2
Query: 5 GI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 184
G+ SG+ G SL +R EL +PG + +Y++I+T HA N
Sbjct: 25 GLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWF 84
Query: 185 VPLILGAPDIAFPRINNI 238
+PL++ D++ PR+NN+
Sbjct: 85 IPLMIKIKDLSMPRLNNL 102
Score = 46.8 bits (106), Expect = 5e-04
Identities = 21/37 (56%), Positives = 28/37 (75%)
Frame = +1
Query: 298 GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
G G G T+YPPLS++ G +DLA+FSLH+AG+SS
Sbjct: 123 GLGCGWTMYPPLSNSEFMDGLPIDLAVFSLHMAGMSS 159
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 87.0 bits (206), Expect = 4e-16
Identities = 36/53 (67%), Positives = 45/53 (84%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AG +T++L DRN NTSF+D GGGD IL+QH+F FFGHPEVYI++LP FG+IS
Sbjct: 206 AGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLIS 258
Score = 54.0 bits (124), Expect = 3e-06
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 187
SG +G L IR EL G L GD Q YN ++T+H N +
Sbjct: 27 SGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFI 86
Query: 188 PLILGAPDIAFPRINNIRF 244
P++ G PD+ FPR+NN+ F
Sbjct: 87 PVMAGFPDMVFPRLNNMSF 105
Score = 36.7 bits (81), Expect = 0.55
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 120 LTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISS 160
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 86.6 bits (205), Expect = 5e-16
Identities = 36/53 (67%), Positives = 45/53 (84%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S
Sbjct: 221 AAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273
Score = 63.7 bits (148), Expect = 4e-09
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVPL +G+ D AFPRINN+ F
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAF 120
Score = 59.7 bits (138), Expect = 7e-08
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 135 LIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGM 194
Query: 466 SFDQLPLFV*AV 501
+ +LPLFV +V
Sbjct: 195 DYSKLPLFVWSV 206
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 86.6 bits (205), Expect = 5e-16
Identities = 36/53 (67%), Positives = 45/53 (84%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFGHPEVYILI+P FG++S
Sbjct: 221 AAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILIVPVFGVVS 273
Score = 63.7 bits (148), Expect = 4e-09
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVPL +G+ D AFPRINN+ F
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAF 120
Score = 59.7 bits (138), Expect = 7e-08
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 135 LIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGM 194
Query: 466 SFDQLPLFV*AV 501
+ +LPLFV +V
Sbjct: 195 DYSKLPLFVWSV 206
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 86.2 bits (204), Expect = 7e-16
Identities = 37/53 (69%), Positives = 44/53 (83%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AG++ LL DRN NTSF+D GG+P+LYQHLF FFGHPEVY++ILP FGIIS
Sbjct: 213 AGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVIILPVFGIIS 265
Score = 60.5 bits (140), Expect = 4e-08
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Frame = +2
Query: 5 GI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 178
G +G+ G+ L +LIR EL +PG G Q+YN+++T H N
Sbjct: 32 GYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGN 91
Query: 179 *LVPLILGAPDIAFPRINNIRF 244
++PL+LGAP++AFPR+N + F
Sbjct: 92 WMLPLMLGAPEMAFPRVNALSF 113
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 85.4 bits (202), Expect = 1e-15
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = +3
Query: 546 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
G + +LL+D + NT FFDP GDPILYQHLF FFGHPEVYILILP FG+IS
Sbjct: 210 GGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILILPAFGVIS 261
Score = 38.3 bits (85), Expect = 0.18
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 17 GIIGTSLRLLIRAELGNPG-SLIGDDQI--YNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 187
G G L +++R EL + +I + + YN I T H N +
Sbjct: 29 GSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFL 88
Query: 188 PLILGAPDIAFPRINNI 238
P++ G+P++A+PRIN+I
Sbjct: 89 PILCGSPELAYPRINSI 105
Score = 36.7 bits (81), Expect = 0.55
Identities = 18/40 (45%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Frame = +1
Query: 292 ENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISS 408
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 124 EFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVAS 163
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 81.0 bits (191), Expect = 3e-14
Identities = 34/53 (64%), Positives = 43/53 (81%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A IT++LTD++L T F+D GGDP+LYQHLF FFGHPEVY++ILP FG+ S
Sbjct: 187 AVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVILPVFGLFS 239
Score = 47.2 bits (107), Expect = 4e-04
Identities = 27/80 (33%), Positives = 35/80 (43%)
Frame = +2
Query: 5 GI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 184
GI S ++G S LL R +L P L D +YN VT H N L
Sbjct: 20 GIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAMPTAIGFFANLL 77
Query: 185 VPLILGAPDIAFPRINNIRF 244
+P PD+ FPR+N + F
Sbjct: 78 IPYHCNLPDLLFPRMNALSF 97
Score = 36.7 bits (81), Expect = 0.55
Identities = 20/36 (55%), Positives = 24/36 (66%)
Frame = +1
Query: 301 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
A G T YPPLSS SV+ ++FSLHLAGI+S
Sbjct: 112 ASAGWTFYPPLSS----LSPSVEFSVFSLHLAGIAS 143
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 80.6 bits (190), Expect = 3e-14
Identities = 35/42 (83%), Positives = 38/42 (90%)
Frame = +3
Query: 576 NLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
N T+FFDPAGGGD IL+QHLF FFGHPEVYILILPGFG+IS
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMIS 232
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 79.8 bits (188), Expect = 6e-14
Identities = 33/48 (68%), Positives = 40/48 (83%)
Frame = +3
Query: 558 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
++ DR+ NT FF+ + GDP+LYQHLF FFGHPEVYI+ILPGFGIIS
Sbjct: 214 MVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMILPGFGIIS 261
Score = 40.7 bits (91), Expect = 0.034
Identities = 20/40 (50%), Positives = 30/40 (75%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 126 LEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIAS 163
Score = 40.3 bits (90), Expect = 0.045
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Frame = +2
Query: 17 GIIGTSLRLLIRAELGNPG-SLIGDD--QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 187
G+IG + +LIR EL G +I D +IYN + T H N L
Sbjct: 32 GMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLY 91
Query: 188 PLILGAPDIAFPRIN 232
P++LG D+ +PR+N
Sbjct: 92 PVLLGYCDVVYPRVN 106
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 78.2 bits (184), Expect = 2e-13
Identities = 34/38 (89%), Positives = 36/38 (94%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH 656
AGAIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 122 AGAITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
Score = 69.3 bits (162), Expect = 8e-11
Identities = 38/73 (52%), Positives = 44/73 (60%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
VE GAGTG TV PPLS+NIAH G SVDLAIFSLH+AG+ S +
Sbjct: 37 VEKGAGTGWTVSPPLSANIAHEGSSVDLAIFSLHMAGVXSILGAINFISTVLNMRPSGMT 96
Query: 469 FDQLPLFV*AVGI 507
++PLFV AV I
Sbjct: 97 PXRMPLFVWAVEI 109
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 75.4 bits (177), Expect = 1e-12
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A+ +LL DR L ++FFDP GG +L+QH F FGHPEVYILILPGFG+IS
Sbjct: 224 ALAMLLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILILPGFGMIS 274
Score = 39.5 bits (88), Expect = 0.078
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +2
Query: 23 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 202
+G LL+R +L P + +++N + T H N VPL++G
Sbjct: 49 VGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIG 107
Query: 203 APDIAFPRINNIRF 244
A D+AFPR+N+ F
Sbjct: 108 ARDVAFPRLNSFGF 121
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 74.9 bits (176), Expect = 2e-12
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A A+ +L D TSFF+P GGGDP++YQHLF F+ HP VYI+ILP FG+IS
Sbjct: 214 ASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMILPFFGVIS 266
Score = 41.5 bits (93), Expect = 0.019
Identities = 23/74 (31%), Positives = 34/74 (45%)
Frame = +2
Query: 23 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 202
IG S +R EL P ++YN ++T H N L+PL++G
Sbjct: 44 IGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVG 102
Query: 203 APDIAFPRINNIRF 244
D+AFPR+N + F
Sbjct: 103 TEDMAFPRLNAVAF 116
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 73.7 bits (173), Expect = 4e-12
Identities = 33/51 (64%), Positives = 40/51 (78%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A+ +LL DRN T+FF AGG DPI +QHLF FFGHPEVY+L+LP GI+S
Sbjct: 260 ALIMLLLDRNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLVLPPMGIVS 309
Score = 39.9 bits (89), Expect = 0.059
Identities = 22/68 (32%), Positives = 32/68 (47%)
Frame = +2
Query: 41 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 220
LL+R EL + +YN ++T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 221 PRINNIRF 244
PRIN I F
Sbjct: 150 PRINAIAF 157
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 73.7 bits (173), Expect = 4e-12
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVP+++GAPD+AFPR+NNI F
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISF 102
Score = 70.1 bits (164), Expect = 5e-11
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 641
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 203 AGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
Score = 67.3 bits (157), Expect = 3e-10
Identities = 37/71 (52%), Positives = 42/71 (59%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS +
Sbjct: 118 VEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMT 177
Query: 469 FDQLPLFV*AV 501
+LPLFV A+
Sbjct: 178 LHKLPLFVWAI 188
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 73.7 bits (173), Expect = 4e-12
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVP+++GAPD+AFPR+NNI F
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISF 102
Score = 67.3 bits (157), Expect = 3e-10
Identities = 37/71 (52%), Positives = 42/71 (59%)
Frame = +1
Query: 289 VENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXS 468
VE GAGTG TVYPPLS +H G SVDLAIFSLHL+GISS +
Sbjct: 118 VEQGAGTGWTVYPPLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMT 177
Query: 469 FDQLPLFV*AV 501
+LPLFV A+
Sbjct: 178 LHKLPLFVWAI 188
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 73.7 bits (173), Expect = 4e-12
Identities = 38/83 (45%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + + +IGT+ +LIR EL PG L GD Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVP+++GAPD+AFPR+NNI F
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISF 102
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 73.3 bits (172), Expect = 5e-12
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
FG +G++GT +LIR EL PG+ I G+ Q+YN ++TAHA
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFG 83
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N VP+++G+PD+AFPR+NNI F
Sbjct: 84 NWFVPILIGSPDMAFPRLNNISF 106
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 72.9 bits (171), Expect = 7e-12
Identities = 33/51 (64%), Positives = 41/51 (80%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AIT LL DRN+N++ +D G DP+LYQHLF FFGHPEVY++ILP FG+ S
Sbjct: 217 AITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVIILPVFGLTS 265
Score = 43.2 bits (97), Expect = 0.006
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Frame = +2
Query: 5 GI*SGIIGTSLRLLIRAELGNPGSLI----GDDQIYNTIVTAHAXXXXXXXXXXXXXXXX 172
G +GI+G + +LIR EL G I + IYN +T H
Sbjct: 29 GYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIGFY 88
Query: 173 XN*LVPLILGAPDIAFPRINNIRF 244
N L+P+++G +++ PR+N I F
Sbjct: 89 GNYLIPMLIGTSELSMPRMNGISF 112
Score = 33.5 bits (73), Expect = 5.1
Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Frame = +1
Query: 307 TG*TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISS 408
+G T+YPPLS+ A G ++DL++ +H+ GISS
Sbjct: 135 SGWTLYPPLSTRDADNIGVNIDLSLLVVHVLGISS 169
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 72.5 bits (170), Expect = 9e-12
Identities = 29/53 (54%), Positives = 41/53 (77%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AGA+T+L D+ L T+FF+PA GGDP++YQ++F F+ HP VY+ +LP FG S
Sbjct: 159 AGAVTMLFLDKYLGTNFFNPAKGGDPLIYQNIFWFYSHPVVYVQVLPVFGFYS 211
Score = 41.1 bits (92), Expect = 0.026
Identities = 19/55 (34%), Positives = 28/55 (50%)
Frame = +2
Query: 68 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 232
PG + D + YN ++T H N L+PL++GA D+AFPR+N
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLN 56
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 72.5 bits (170), Expect = 9e-12
Identities = 30/52 (57%), Positives = 37/52 (71%)
Frame = +3
Query: 546 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
G +LL D + TSFF P GGGDP+L+QH F F+ HP VY+L+LP FGI S
Sbjct: 230 GGAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLVLPVFGIFS 281
Score = 46.0 bits (104), Expect = 9e-04
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
++G L +++R EL P + + D +YN + T H N L+P ++
Sbjct: 52 LVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMI 110
Query: 200 GAPDIAFPRINNIRF 244
GAPD+AFP++N F
Sbjct: 111 GAPDMAFPKLNAAAF 125
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 71.7 bits (168), Expect = 2e-11
Identities = 31/51 (60%), Positives = 40/51 (78%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A+ ++ DR+ T+FF+ A GGDPIL QHLF FFGHPEVY+LI+P FG I+
Sbjct: 366 AVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHPEVYVLIIPTFGFIN 416
Score = 49.6 bits (113), Expect = 7e-05
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + +G+ G +L +IR EL +P S GD Y +VTAH
Sbjct: 70 FSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFA 129
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N L+P +G+ D+A+PR+N+I F
Sbjct: 130 NFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 71.3 bits (167), Expect = 2e-11
Identities = 31/51 (60%), Positives = 39/51 (76%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A T L+ DR + T FF+PA GGD +L+QHLF FFGHPEVYI+ LP G++S
Sbjct: 221 ASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYIIFLPAVGMVS 271
Score = 36.7 bits (81), Expect = 0.55
Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 23 IGTSLRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
+G L LL+R +L P + IG D+ YN I T H LVPL++
Sbjct: 46 LGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMV 103
Query: 200 GAPDIAFPRIN 232
G IAFPR+N
Sbjct: 104 GTRHIAFPRLN 114
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 70.5 bits (165), Expect = 4e-11
Identities = 35/51 (68%), Positives = 39/51 (76%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AI +LL DRN TSFF AG G IL+QHLF FFGHPEVYI++LP GIIS
Sbjct: 292 AIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIVLPPMGIIS 340
Score = 54.0 bits (124), Expect = 3e-06
Identities = 28/81 (34%), Positives = 45/81 (55%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 181
FG+ + +G + +L+R EL +PG + + YN+++T+H N
Sbjct: 104 FGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NY 162
Query: 182 LVPLILGAPDIAFPRINNIRF 244
L+PL++GA D+AFPRIN I F
Sbjct: 163 LIPLLIGADDMAFPRINAIAF 183
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 70.1 bits (164), Expect = 5e-11
Identities = 33/47 (70%), Positives = 36/47 (76%)
Frame = +3
Query: 561 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
LL DR+ T FF P GGD +L+QHLF FFGHPEVYILILP GIIS
Sbjct: 227 LLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILILPTMGIIS 273
Score = 41.5 bits (93), Expect = 0.019
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
+IG LL+R +LG P + +YN + T H N +VPL++
Sbjct: 47 LIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMI 105
Query: 200 GAPDIAFPRIN 232
GA D+AFPR+N
Sbjct: 106 GARDMAFPRLN 116
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 69.3 bits (162), Expect = 8e-11
Identities = 29/53 (54%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Frame = +3
Query: 546 GAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
G + +L+T NL FDPA GGDP+L+QHLF F+ HP VYI++LP FG++S
Sbjct: 229 GLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMVLPSFGVMS 281
Score = 51.2 bits (117), Expect = 2e-05
Identities = 27/71 (38%), Positives = 34/71 (47%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
++G LLIR EL PG I D YN T H N ++PL+L
Sbjct: 58 LVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNFMLPLML 117
Query: 200 GAPDIAFPRIN 232
GA D+AFPR+N
Sbjct: 118 GAKDVAFPRLN 128
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 69.3 bits (162), Expect = 8e-11
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AGAI +LL +R+L FF DPA GDP L+QH+F FFGHPEVYIL+LP G++S
Sbjct: 209 AGAIMLLL-ERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILVLPAMGLVS 265
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 67.3 bits (157), Expect = 3e-10
Identities = 27/50 (54%), Positives = 38/50 (76%)
Frame = +3
Query: 552 ITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+ +++ DR T+FF+P GG+ ++++HLF FGHPEVYILILP FGI S
Sbjct: 215 LALMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILILPAFGIFS 264
Score = 36.3 bits (80), Expect = 0.73
Identities = 21/75 (28%), Positives = 34/75 (45%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
++G + IR +L P + Q YN ++T H N +VPL +
Sbjct: 40 LVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQI 98
Query: 200 GAPDIAFPRINNIRF 244
GA D++FP +N + F
Sbjct: 99 GARDVSFPFLNALGF 113
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 66.9 bits (156), Expect = 5e-10
Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 10/58 (17%)
Frame = +3
Query: 558 ILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+LL DR L TSFF P GGG P+L+QHLF FFGHPEVYI+ LP FGI+S
Sbjct: 238 MLLLDRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIVALPAFGIVS 295
Score = 39.1 bits (87), Expect = 0.10
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +2
Query: 17 GIIGTSLRLLIRAELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPL 193
G++ L L+R +LG PG+ D Y +T H N L+PL
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPL 112
Query: 194 ILGAPDIAFPRINNIRF 244
++GA D+ FP +N + +
Sbjct: 113 MVGARDMVFPYVNMLSY 129
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 66.5 bits (155), Expect = 6e-10
Identities = 30/42 (71%), Positives = 31/42 (73%)
Frame = +2
Query: 575 KLKYIIF*SCWRRRPNFISTFILIFWTS*SLYFNFTRIWYNF 700
K KYIIF S W F+STFILIFWT SLYFNFT IWYNF
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFNFTSIWYNF 48
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 66.5 bits (155), Expect = 6e-10
Identities = 35/79 (44%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 187
SG+ GT++ L+IR EL PGS L G+ Q++N +V HA N L+
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNYLL 84
Query: 188 PLILGAPDIAFPRINNIRF 244
PL++GA D AFPRINNI F
Sbjct: 85 PLMIGATDTAFPRINNIAF 103
Score = 66.5 bits (155), Expect = 6e-10
Identities = 37/74 (50%), Positives = 44/74 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE+GAGTG TVYPPLSS AH G SVDLAIF+LHL ISS
Sbjct: 118 LVESGAGTGWTVYPPLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGM 177
Query: 466 SFDQLPLFV*AVGI 507
+ +LPLFV ++ I
Sbjct: 178 TMHKLPLFVWSIFI 191
Score = 64.5 bits (150), Expect = 2e-09
Identities = 30/57 (52%), Positives = 37/57 (64%)
Frame = +3
Query: 510 AFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 680
AF + IT+LL DRN NTSFF+ +GGGDPILY+HLF FFG I++L
Sbjct: 193 AFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 66.1 bits (154), Expect = 8e-10
Identities = 32/55 (58%), Positives = 38/55 (69%), Gaps = 5/55 (9%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPA-----GGGDPILYQHLF*FFGHPEVYILILPGFGII 698
A +LL DR+ T FF GGGDPIL+QHLF FGHPEVYI+ILP +GI+
Sbjct: 238 AALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEVYIMILPAWGIL 292
Score = 35.1 bits (77), Expect = 1.7
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 13/88 (14%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNP-------GSLI-GDDQI-----YNTIVTAHAXXXXXXXXXXXX 160
++G +L +LIR + G P G L+ G+ + Y I T H
Sbjct: 47 LVGGALAMLIRWQWGFPYRPVPLVGRLLFGESGVIGPATYQQIFTTHGLVMIFFAVTPVL 106
Query: 161 XXXXXN*LVPLILGAPDIAFPRINNIRF 244
N L+PL++GA D+AFPR+N F
Sbjct: 107 IGTFGNLLIPLMIGARDMAFPRLNMYSF 134
Score = 32.7 bits (71), Expect = 9.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 301 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 155 AGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSS 190
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 65.7 bits (153), Expect = 1e-09
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + S +IGT L +IR EL N GS L G+ Q +N ++TAHA
Sbjct: 26 FALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFG 85
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N L+PL+LGA D+AF R+NNI F
Sbjct: 86 NYLMPLMLGASDMAFARLNNISF 108
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 680
A +T+ + DRN NTSFF+ AGGGD +LYQHLF ++ HPEV I+ L
Sbjct: 209 AAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKIICL 254
Score = 58.0 bits (134), Expect = 2e-07
Identities = 32/72 (44%), Positives = 40/72 (55%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE GAGTG TVY PL+ +H G +VDLAIFSLHL+G SS
Sbjct: 123 LVEAGAGTGWTVYFPLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGM 182
Query: 466 SFDQLPLFV*AV 501
++ +PLF AV
Sbjct: 183 KYENVPLFAWAV 194
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.7 bits (153), Expect = 1e-09
Identities = 36/83 (43%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + S +IGT L +IR EL N GS L G+ Q +N ++TAHA
Sbjct: 26 FALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFG 85
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N L+PL+LGA D+AF R+NNI F
Sbjct: 86 NYLMPLMLGASDMAFARLNNISF 108
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 65.7 bits (153), Expect = 1e-09
Identities = 29/52 (55%), Positives = 38/52 (73%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 698
A A+ +LLTDR + FF+PA GGDPI Y HLF F HPEVY+L++P G++
Sbjct: 205 AAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLVIPAIGMM 256
Score = 40.3 bits (90), Expect = 0.045
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = +2
Query: 23 IGTSLRLLIRAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
+G +L LLIRAEL PG+ I D +N + T H N VP+++
Sbjct: 37 LGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMV 95
Query: 200 GAPDIAFPRINNIRF 244
D+A+P++N I F
Sbjct: 96 RYKDMAYPKLNAIAF 110
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 65.3 bits (152), Expect = 1e-09
Identities = 28/51 (54%), Positives = 35/51 (68%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A +L DRN T FFD A GG P+L+QHLF F HP VY+++LP GI+S
Sbjct: 241 AFLLLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 65.3 bits (152), Expect = 1e-09
Identities = 35/72 (48%), Positives = 43/72 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+VE+GAGTG TVYPPL+S AH G SVDLAIF+LH+ ISS
Sbjct: 118 LVESGAGTGWTVYPPLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGM 177
Query: 466 SFDQLPLFV*AV 501
+ +LPLFV A+
Sbjct: 178 TMHKLPLFVWAI 189
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/79 (41%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 187
SG+ GT++ L+IR EL PG L G++Q++N +V HA N ++
Sbjct: 25 SGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNYML 84
Query: 188 PLILGAPDIAFPRINNIRF 244
PL++GA D AFPRINNI F
Sbjct: 85 PLMIGATDTAFPRINNIGF 103
Score = 62.5 bits (145), Expect = 1e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFG 653
+ +T+LL DRN NTSFF+ AGGGDPILY+HLF FFG
Sbjct: 204 SAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 64.5 bits (150), Expect = 2e-09
Identities = 29/51 (56%), Positives = 35/51 (68%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A+ +L+ DR +FF+ GG + YQHLF FGHPEVYILILP GIIS
Sbjct: 225 ALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIIS 275
Score = 37.1 bits (82), Expect = 0.42
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
++G ++R +L PG + + +N + T HA N +PL++
Sbjct: 45 LVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMI 103
Query: 200 GAPDIAFPRIN 232
GA D+AFPR+N
Sbjct: 104 GARDVAFPRLN 114
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 64.5 bits (150), Expect = 2e-09
Identities = 31/53 (58%), Positives = 37/53 (69%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
AG + L +R T FFD A GG P+L+Q LF FFGHPEVYILILP G++S
Sbjct: 202 AGLVFAYL-ERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILILPAMGLVS 253
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 64.1 bits (149), Expect = 3e-09
Identities = 29/47 (61%), Positives = 35/47 (74%)
Frame = +3
Query: 561 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+L DR L +DPA GG +L+QHLF FFGHPEVY+L LP FGI+S
Sbjct: 235 VLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVLALPFFGIVS 280
Score = 45.6 bits (103), Expect = 0.001
Identities = 26/74 (35%), Positives = 37/74 (50%)
Frame = +2
Query: 23 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 202
+G + LLIRAEL PG ++ +N + T H N ++PL +G
Sbjct: 55 LGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIG 113
Query: 203 APDIAFPRINNIRF 244
APD+AFPR+N F
Sbjct: 114 APDVAFPRLNAFGF 127
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 63.7 bits (148), Expect = 4e-09
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVPL +G+ D AFPRINN+ F
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAF 120
Score = 60.5 bits (140), Expect = 4e-08
Identities = 27/48 (56%), Positives = 36/48 (75%), Gaps = 2/48 (4%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGH--PEVYILIL 680
A +T+LL DRN NTSFF +GGGDP+LY+H+F FFG P + I+I+
Sbjct: 221 AAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIIII 268
Score = 59.7 bits (138), Expect = 7e-08
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 135 LIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGM 194
Query: 466 SFDQLPLFV*AV 501
+ +LPLFV +V
Sbjct: 195 DYSKLPLFVWSV 206
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 63.7 bits (148), Expect = 4e-09
Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELG--NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F + SG++G SL +L+R EL NP L+ + Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N LVPL +G+ D AFPRINN+ F
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAF 120
Score = 59.7 bits (138), Expect = 7e-08
Identities = 28/72 (38%), Positives = 43/72 (59%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 135 LIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGM 194
Query: 466 SFDQLPLFV*AV 501
+ +LPLFV +V
Sbjct: 195 DYSKLPLFVWSV 206
Score = 53.2 bits (122), Expect = 6e-06
Identities = 28/51 (54%), Positives = 36/51 (70%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 695
A +T+LL DRN NTSFF +GGGDP+LY+H+ F+ +P V ILI GI
Sbjct: 221 AAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHI--FYKNP-VLILIWLTSGI 268
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 63.3 bits (147), Expect = 6e-09
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A +L +R+ FF GGDP+L+QHLF FFGHPEVYI+ LP G++S
Sbjct: 231 ATMLLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYIIFLPAAGLVS 281
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 61.3 bits (142), Expect = 2e-08
Identities = 26/48 (54%), Positives = 34/48 (70%)
Frame = +3
Query: 558 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+L +R L FFD GGDP+L+QHLF FGHPEVYI+ LP G+++
Sbjct: 250 LLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYIIFLPAAGMVA 297
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 61.3 bits (142), Expect = 2e-08
Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Frame = +3
Query: 558 ILLTDRNLNTSFF-DPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+LL DRNL T FF +PAGG +L+ HLF FFGHPEVYIL+ P G ++
Sbjct: 217 LLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILLFPALGAMA 263
Score = 38.3 bits (85), Expect = 0.18
Identities = 25/75 (33%), Positives = 33/75 (44%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
+I SL LL R +L P S Y VT H N +VPL +
Sbjct: 37 LIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQI 95
Query: 200 GAPDIAFPRINNIRF 244
GA D+AFPR+N + +
Sbjct: 96 GARDLAFPRLNALSY 110
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 60.9 bits (141), Expect = 3e-08
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A +L +R + FF GGDP+L+QHLF FFGHPEVYI+ LP G++S
Sbjct: 290 ATALLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYIIFLPAAGMVS 340
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 60.5 bits (140), Expect = 4e-08
Identities = 28/51 (54%), Positives = 34/51 (66%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A +L DR FF A GDPIL+QHLF FFGHPEVYI+ +P G++S
Sbjct: 228 ASLMLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYIIFIPALGMVS 277
Score = 37.9 bits (84), Expect = 0.24
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
I+G L LL+R +L P + D + YN + + H ++PL+L
Sbjct: 52 ILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLML 110
Query: 200 GAPDIAFPRIN 232
G D+ FPR+N
Sbjct: 111 GTRDMTFPRLN 121
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 60.5 bits (140), Expect = 4e-08
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A ++L +R + S+F+PA GGDP+L+Q F F+ HP VY+++LP GI++
Sbjct: 215 ATLLVLLERKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVMLLPYLGILA 265
Score = 42.7 bits (96), Expect = 0.008
Identities = 23/64 (35%), Positives = 31/64 (48%)
Frame = +2
Query: 41 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 220
LLIR +L P + + YN I+T H N +VPL+LGA D+A
Sbjct: 47 LLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVAL 106
Query: 221 PRIN 232
PR+N
Sbjct: 107 PRVN 110
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 60.1 bits (139), Expect = 5e-08
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +3
Query: 570 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILP 683
+R + FFDP GGDP+L+QHLF FGHPEVYI+ LP
Sbjct: 254 ERGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYIIFLP 291
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 59.7 bits (138), Expect = 7e-08
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
++ ++ + FDPA GGDP+L+QH F F+ HP VYI++LP +IS
Sbjct: 224 SLLLVAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMVLPAMAVIS 274
Score = 50.0 bits (114), Expect = 6e-05
Identities = 26/74 (35%), Positives = 36/74 (48%)
Frame = +2
Query: 23 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 202
+G LLIR EL PG I D YN + T H N L+P+++G
Sbjct: 52 LGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIG 111
Query: 203 APDIAFPRINNIRF 244
A D+AFP++N + F
Sbjct: 112 AKDVAFPKLNLLSF 125
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 9e-08
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 59.3 bits (137), Expect = 9e-08
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
F I G+ GT++ ++IR EL PG+ L G+ Q++N +V HA
Sbjct: 21 FAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFG 80
Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
N L+PL++GA D++F R+NNI F
Sbjct: 81 NYLLPLMIGASDMSFARLNNISF 103
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 58.8 bits (136), Expect = 1e-07
Identities = 27/52 (51%), Positives = 36/52 (69%)
Frame = +3
Query: 546 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
GA+ +L DR L+ FF GG+ ++Y +LF +GHPEVYIL+LP FGI S
Sbjct: 249 GALAMLALDRYLDFHFFTAELGGNAMMYLNLFWAWGHPEVYILVLPAFGIFS 300
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 58.8 bits (136), Expect = 1e-07
Identities = 32/62 (51%), Positives = 37/62 (59%), Gaps = 11/62 (17%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAG-----------GGDPILYQHLF*FFGHPEVYILILPGFGI 695
A +L DR TSFF P+G GG +L+QHLF FFGHPEVYI ILP GI
Sbjct: 242 ACILLCLDRVAGTSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAILPAMGI 301
Query: 696 IS 701
+S
Sbjct: 302 VS 303
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 58.8 bits (136), Expect = 1e-07
Identities = 26/48 (54%), Positives = 32/48 (66%)
Frame = +3
Query: 558 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+L +R + FF A GGD +L+QHLF FGHPEVYI+ LP G IS
Sbjct: 224 LLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYIIFLPAAGAIS 271
Score = 39.1 bits (87), Expect = 0.10
Identities = 23/75 (30%), Positives = 34/75 (45%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
++G L +LIRA+L P S + YN + T H L+P +L
Sbjct: 45 VVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLL 103
Query: 200 GAPDIAFPRINNIRF 244
G+ D+AFPR+ F
Sbjct: 104 GSRDLAFPRLTAYGF 118
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 58.4 bits (135), Expect = 2e-07
Identities = 23/50 (46%), Positives = 34/50 (68%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGII 698
A+T+L D+ + T FFD A GGD + YQ+LF F+ HP VY++ LP ++
Sbjct: 205 AVTMLTFDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVIFLPFMAMV 254
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 35 LRLLIRAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 211
+ +LIR EL G I DD +YNT + H N +PL++GA D
Sbjct: 35 MAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKD 94
Query: 212 IAFPRIN 232
+AFPR+N
Sbjct: 95 VAFPRVN 101
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 57.6 bits (133), Expect = 3e-07
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A+ +L DR L+ F GG+P++Y +LF +GHPEVYILILP FG+ S
Sbjct: 249 ALALLTVDRYLDFHIFTNELGGNPMMYVNLFWAWGHPEVYILILPAFGVFS 299
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 57.2 bits (132), Expect = 4e-07
Identities = 26/48 (54%), Positives = 31/48 (64%)
Frame = +3
Query: 558 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+L +R FF A GGD +L+QHLF FGHPEVYI+ LP G IS
Sbjct: 224 LLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYIIFLPAAGAIS 271
Score = 35.5 bits (78), Expect = 1.3
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
+IG L +LIRA+L +P S + Y + T H L+P +L
Sbjct: 45 LIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKML 103
Query: 200 GAPDIAFPRINNIRF 244
G+ D+A+PR++ F
Sbjct: 104 GSRDLAYPRLSAYGF 118
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/61 (50%), Positives = 39/61 (63%), Gaps = 10/61 (16%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDP----AG------GGDPILYQHLF*FFGHPEVYILILPGFGII 698
A +L+ DR+L TSFF AG GG P+L+QHLF F GHPEVYI+++P GI
Sbjct: 257 AALLLIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQHLFWFLGHPEVYIVLIPALGIT 316
Query: 699 S 701
S
Sbjct: 317 S 317
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 56.8 bits (131), Expect = 5e-07
Identities = 26/51 (50%), Positives = 34/51 (66%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A+ +L DR L T FF GG+ +LY +LF +GHPEVY ++LP FG IS
Sbjct: 268 ALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVVLPAFGFIS 318
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 56.8 bits (131), Expect = 5e-07
Identities = 28/59 (47%), Positives = 37/59 (62%), Gaps = 11/59 (18%)
Frame = +3
Query: 558 ILLTDRNLNTSFFDP-----------AGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
++L DR + T FF P AGGG P+L+QHLF F+ HP VYI+ILP G++S
Sbjct: 246 MMLADRLIGTGFFLPEGLVVNNSPMAAGGGQPLLWQHLFWFYSHPAVYIMILPAMGMVS 304
Score = 35.9 bits (79), Expect = 0.96
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +2
Query: 92 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 244
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSY 136
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 56.0 bits (129), Expect = 8e-07
Identities = 26/33 (78%), Positives = 28/33 (84%)
Frame = +1
Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 384
+VENGAGTG TVYPPLSS AH G SVDLAI+S
Sbjct: 33 MVENGAGTGWTVYPPLSSGTAHAGASVDLAIYS 65
Score = 52.8 bits (121), Expect = 8e-06
Identities = 25/41 (60%), Positives = 27/41 (65%)
Frame = +2
Query: 533 TCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFWT 655
TCFS S+Y IIN K KY IF W P +STFILIFWT
Sbjct: 112 TCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
Score = 33.9 bits (74), Expect = 3.9
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +2
Query: 191 LILGAPDIAFPRINNIRF 244
L+LGAPD+AFPR+NN+ F
Sbjct: 1 LMLGAPDMAFPRMNNMSF 18
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 56.0 bits (129), Expect = 8e-07
Identities = 40/115 (34%), Positives = 50/115 (43%)
Frame = +1
Query: 163 WRIWKLXXXXXXXXXXXXXPTNK*YKXXXXXXXXXXXXXRRIVENGAGTG*TVYPPLSSN 342
W IWKL P NK YK +R N + PL+S+
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKR---NSS--------PLASS 76
Query: 343 IAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 507
IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 77 IAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 56.0 bits (129), Expect = 8e-07
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 549 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
A+ +L DR FF GG P+L+ +LF +GHPEVYI+ILP FGI S
Sbjct: 245 ALALLSFDRLFGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFS 295
Score = 42.3 bits (95), Expect = 0.011
Identities = 24/68 (35%), Positives = 33/68 (48%)
Frame = +2
Query: 41 LLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 220
L++RA+L P + D YN I T H N +VPL +GA D+AF
Sbjct: 76 LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134
Query: 221 PRINNIRF 244
P +NN+ F
Sbjct: 135 PYLNNLSF 142
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 54.0 bits (124), Expect = 3e-06
Identities = 25/47 (53%), Positives = 31/47 (65%)
Frame = +3
Query: 561 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
+ DR L+T F+ GG +LY +L +GHPEVYILILP FGI S
Sbjct: 248 IFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILILPSFGIFS 294
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 52.0 bits (119), Expect = 1e-05
Identities = 25/46 (54%), Positives = 31/46 (67%)
Frame = +3
Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILIL 680
AG IT+LL+DRN N FF GG PIL+Q++ FGH +V LIL
Sbjct: 36 AGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLFGHTDVLFLIL 81
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 51.6 bits (118), Expect = 2e-05
Identities = 24/47 (51%), Positives = 31/47 (65%)
Frame = +3
Query: 561 LLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
L DR L+ FF GG+ + + ++F FGHPEVYILILP FG+ S
Sbjct: 273 LALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILILPAFGVYS 319
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 50.8 bits (116), Expect = 3e-05
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHA 124
F I SG+IG+S+ +LIR EL GS++ +QIYNT+VT+HA
Sbjct: 6 FAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 50.4 bits (115), Expect = 4e-05
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +3
Query: 606 GGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
GGG P+L+QHLF F+ HP VYI++LP G++S
Sbjct: 276 GGGQPLLWQHLFWFYSHPAVYIMLLPIMGMVS 307
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +2
Query: 92 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 244
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSY 140
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 49.6 bits (113), Expect = 7e-05
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +3
Query: 579 LNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 695
L S F+P GG P+LYQ F F+ HP VY+++LP GI
Sbjct: 233 LGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVMLLPYLGI 271
Score = 38.3 bits (85), Expect = 0.18
Identities = 22/70 (31%), Positives = 30/70 (42%)
Frame = +2
Query: 23 IGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 202
+G L L IR +L P + YN ++T HA N +PL LG
Sbjct: 49 LGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLG 108
Query: 203 APDIAFPRIN 232
D+A PR+N
Sbjct: 109 VRDVALPRLN 118
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 48.4 bits (110), Expect = 2e-04
Identities = 23/37 (62%), Positives = 25/37 (67%)
Frame = +1
Query: 298 GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 408
G G VYPP SS +AH +VDL IF LHLAGISS
Sbjct: 111 GVGXXWXVYPPXSSGLAHSSGAVDLGIFXLHLAGISS 147
Score = 36.7 bits (81), Expect = 0.55
Identities = 25/73 (34%), Positives = 30/73 (41%)
Frame = +2
Query: 26 GTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 205
G L R L G +IG QI VTA A L PL +GA
Sbjct: 20 GXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGA 79
Query: 206 PDIAFPRINNIRF 244
P +A PR+ N+ F
Sbjct: 80 PXMAXPRLXNMSF 92
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 45.6 bits (103), Expect = 0.001
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = +3
Query: 546 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFG 692
G +LL ++ S++ GG +++++LF +FGHPEVY+L+LPG G
Sbjct: 234 GLFFLLLVGNLMHASYYISNYGG-ALMWENLFWYFGHPEVYLLLLPGTG 281
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 44.8 bits (101), Expect = 0.002
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 11/62 (17%)
Frame = +3
Query: 549 AITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 695
A+ IL +D L T++F D G +L+ HLF FFGHPEVYI+ P G+
Sbjct: 216 ALMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIVFFPALGV 275
Query: 696 IS 701
++
Sbjct: 276 MA 277
Score = 39.1 bits (87), Expect = 0.10
Identities = 25/75 (33%), Positives = 35/75 (46%)
Frame = +2
Query: 20 IIGTSLRLLIRAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 199
+ G L LL R EL + G+ + YN V+ H N LVPL +
Sbjct: 38 VFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQI 96
Query: 200 GAPDIAFPRINNIRF 244
GA D+AFPR+N + +
Sbjct: 97 GADDLAFPRLNALSY 111
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/19 (94%), Positives = 19/19 (100%)
Frame = +3
Query: 645 FFGHPEVYILILPGFGIIS 701
FFGHPEVYILILPGFG+IS
Sbjct: 2 FFGHPEVYILILPGFGMIS 20
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 41.1 bits (92), Expect = 0.026
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = +2
Query: 530 TTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 643
+TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 97 STCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 40.7 bits (91), Expect = 0.034
Identities = 16/19 (84%), Positives = 18/19 (94%)
Frame = +3
Query: 645 FFGHPEVYILILPGFGIIS 701
FFGHPEVY+LILP FGI+S
Sbjct: 1 FFGHPEVYVLILPVFGIVS 19
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 40.3 bits (90), Expect = 0.045
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHA 124
SG+ GT++ L+IR EL PGS L G+ Q++N +V HA
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 38.3 bits (85), Expect = 0.18
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 632 TFILIFWTS*SLYFNFTRIWYNF 700
+ ++IFW+S SLYFN IWYNF
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNF 24
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 36.3 bits (80), Expect = 0.73
Identities = 17/36 (47%), Positives = 19/36 (52%)
Frame = +3
Query: 588 SFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGI 695
S F G P+ Y F F HPEVY+ ILP F I
Sbjct: 311 SHFYTGPTGHPLAYLDQFWFLFHPEVYVFILPAFAI 346
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYN 103
FG +G++GT +LIR EL PG+ I G+ Q+YN
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +2
Query: 2 FGI*SGIIGTSLRLLIRAELGNPGSLI--GDDQIYN 103
FG +G++GT +LIR EL PG+ I G+ Q+YN
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 35.5 bits (78), Expect = 1.3
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIV 112
SG+ GT++ L+IR EL PGS L G+ Q++N +V
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1;
Pichia guilliermondii|Rep: Cytochrome c oxidase subunit
1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 168
Score = 34.3 bits (75), Expect = 2.9
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAEL--GNPGSLIGDDQIYNTIVTAHA 124
+ ++GT + ++IR EL GN G++Q YN ++T HA
Sbjct: 3 ASMVGTGMSVIIRMELSSGNSQFFHGNNQAYNVLITGHA 41
>UniRef50_A5URU0 Cluster: Cytochrome c oxidase, subunit I; n=4;
Chloroflexaceae|Rep: Cytochrome c oxidase, subunit I -
Roseiflexus sp. RS-1
Length = 561
Score = 33.9 bits (74), Expect = 3.9
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +3
Query: 609 GGDPILYQHLF*FFGHPEVYILILPGF 689
G DP+L + LF F GHP VY +LP +
Sbjct: 224 GTDPVLARTLFWFTGHPIVYFWLLPAY 250
>UniRef50_O67937 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 592
Score = 33.5 bits (73), Expect = 5.1
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 615 DPILYQHLF*FFGHPEVYILILPGF 689
+P+L + LF FFGHP VY +LP +
Sbjct: 209 NPLLARTLFWFFGHPVVYFWLLPAY 233
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 33.5 bits (73), Expect = 5.1
Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
Frame = +2
Query: 14 SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTA 118
SG+ GT++ L+IR EL PGS L G+ Q++N T+
Sbjct: 25 SGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 513,890,572
Number of Sequences: 1657284
Number of extensions: 8408341
Number of successful extensions: 17218
Number of sequences better than 10.0: 110
Number of HSP's better than 10.0 without gapping: 16509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17134
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55785129165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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