Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0056
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    93   3e-20

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 93.1 bits (221), Expect = 3e-20
 Identities = 38/53 (71%), Positives = 46/53 (86%)
 Frame = +3

Query: 543 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVYILILPGFGIIS 701
           AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPEVYILI+P FG++S
Sbjct: 210 AGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPEVYILIMPAFGVVS 262



 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
 Frame = +2

Query: 2   FGI*SGIIGTSLRLLIRAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXX 175
           FG+ SGIIG+    +IR EL  PGS  L G+ Q+YN  ++AH                  
Sbjct: 27  FGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFG 86

Query: 176 N*LVPLILGAPDIAFPRINNIRF 244
           N LVPL++GAPD+A+PR+NN  F
Sbjct: 87  NYLVPLMIGAPDVAYPRVNNFTF 109



 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 32/74 (43%), Positives = 38/74 (51%)
 Frame = +1

Query: 286 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXX 465
           + E G G G TVYPPLSS  +H G ++DLAI SL L GISS                   
Sbjct: 124 LTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGL 183

Query: 466 SFDQLPLFV*AVGI 507
           S  Q+PLF  A+ I
Sbjct: 184 SLYQMPLFAWAIMI 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,405
Number of Sequences: 5004
Number of extensions: 33838
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)