Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0052
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 38 0.007
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 37 0.016
06_03_1127 - 27807784-27807963,27808362-27808460,27809076-278091... 32 0.59
08_02_0210 + 14324539-14324609,14324735-14325740,14325838-143273... 30 1.8
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804... 29 4.2
01_04_0143 + 16689471-16689498,16689687-16689818,16689974-166900... 28 7.3
12_02_0626 - 21344530-21344986,21346132-21346469,21347300-213473... 28 9.7
02_03_0190 + 16188329-16188514,16188552-16188885,16190275-161907... 28 9.7
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/57 (35%), Positives = 30/57 (52%)
Frame = +1
Query: 265 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 435
SY Y +YF+ +GFAK F++ SD+ + LIK+ RGG++ S T
Sbjct: 138 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRGGRVRLQSIVT 194
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 37.1 bits (82), Expect = 0.016
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 265 SYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTT 435
SY Y +YF+ +GFAK F++ SD+ + L+K+ RGG++ S T
Sbjct: 106 SYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNMRGGRVRLQSIVT 162
>06_03_1127 -
27807784-27807963,27808362-27808460,27809076-27809165,
27809272-27809404,27809539-27809624,27810028-27810099,
27810329-27810415,27810485-27810616,27810718-27810789,
27810957-27811037,27811871-27811963,27812298-27812465
Length = 430
Score = 31.9 bits (69), Expect = 0.59
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 594 TQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVYLFDEYL 740
T Y +S + LAGHT+D+ E G++L LA L D+ L
Sbjct: 272 TYYKTASLISNSCKAVAILAGHTADVSMLAYE-YGRNLGLAFQLIDDVL 319
>08_02_0210 +
14324539-14324609,14324735-14325740,14325838-14327390,
14327473-14327601,14328345-14328510
Length = 974
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 40 IRH*INRIKYEGVCSHRCLSGSGCAGRGRLMLSERRPRM 156
IRH +N K+ C +SG C L++S R PRM
Sbjct: 739 IRHRVNLAKHTCTCREWQVSGKPCPHALALIISTRNPRM 777
>01_01_1018 -
8046819-8046876,8046995-8047212,8048099-8048177,
8048455-8048540,8048698-8048983,8049063-8049205,
8049308-8049508,8049626-8049754,8050463-8050738,
8050823-8051098,8051364-8052364,8052452-8052634,
8052865-8052937,8053205-8053313,8053622-8053785
Length = 1093
Score = 29.1 bits (62), Expect = 4.2
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 558 TKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENN 695
T N DL H A+I YI E + ++ GHTSD + F E +
Sbjct: 269 TGNRDLYH-AQIHPYINGEHKRDRCIQMKEKLGHTSDHEGFSREKS 313
>01_04_0143 +
16689471-16689498,16689687-16689818,16689974-16690013,
16690214-16690280,16690349-16690431,16690755-16690821,
16692741-16692821,16693696-16693791,16694172-16694198
Length = 206
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 24 CYFFENSPLNKSHQI*RCMLS-SLPVWLWVC 113
CY E + L++ HQI C ++ S V +W C
Sbjct: 71 CYHLEEADLHQCHQILTCTINGSSLVMIWCC 101
>12_02_0626 -
21344530-21344986,21346132-21346469,21347300-21347338,
21347572-21347629,21349854-21350136,21350404-21350766,
21350768-21350840
Length = 536
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 88 RCLSGSGCAGRGRLMLSERRPRMQTDFKSAALQRVLRPIQGQPRCSERTEG 240
+ ++G G +GRG ++ + PR + +A +R L +G +C + G
Sbjct: 87 KAVTGGGRSGRGLVVCCQMAPRRGGGERRSAQRRRLERRKGGDQCDDELSG 137
>02_03_0190 +
16188329-16188514,16188552-16188885,16190275-16190745,
16191055-16191249,16191519-16191643,16192082-16192142,
16192774-16193023,16193129-16193279,16193594-16193902
Length = 693
Score = 27.9 bits (59), Expect = 9.7
Identities = 18/79 (22%), Positives = 31/79 (39%)
Frame = +1
Query: 211 QPRCSERTEGISLTVLKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKH 390
Q CSE E I +L S + ++ + GF K+++ L D E + +
Sbjct: 394 QSSCSEEVEDIKSVLLDPSVIRSATGNFAEENKLGEGGFGKVYKGLMPDGQEIAVKRLAK 453
Query: 391 VTKRGGKMDFSSHTTLKGD 447
+K+ +D L D
Sbjct: 454 GSKQDLNIDDKKREQLAWD 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,393,156
Number of Sequences: 37544
Number of extensions: 395685
Number of successful extensions: 1025
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -