Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0052
(786 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg (sp... 35 0.057
AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin pro... 34 0.10
AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin prot... 31 0.71
U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical pr... 29 3.8
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p... 28 6.6
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 28 6.6
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 28 6.6
Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical p... 28 8.7
Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical p... 28 8.7
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 28 8.7
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 28 8.7
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 28 8.7
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 28 8.7
>AC024791-6|AAF60660.2| 782|Caenorhabditis elegans Human spg
(spastic paraplegia)protein 7 protein.
Length = 782
Score = 35.1 bits (77), Expect = 0.057
Identities = 18/52 (34%), Positives = 25/52 (48%)
Frame = +3
Query: 549 REVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGKD 704
+ V K ++LH Q EE F +Q TIR A +DLK+F + D
Sbjct: 41 KSVLKQQEVLHLLAKDQRFEERFFNQVQQTIRYFASKPNDLKKFFRKEASTD 92
>AF016447-16|AAG24016.1| 170|Caenorhabditis elegans Ferritin
protein 1 protein.
Length = 170
Score = 34.3 bits (75), Expect = 0.10
Identities = 12/33 (36%), Positives = 23/33 (69%)
Frame = +3
Query: 579 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 677
+DA +T YI+E+++ +Q +I A H +++KR
Sbjct: 121 NDAHLTNYIQEKYLEEQVHSINEFARHIANIKR 153
Score = 27.9 bits (59), Expect = 8.7
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +1
Query: 256 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 414
L SY YL +++F+ AK F++ SD+ L++ RGG++
Sbjct: 24 LYASYVYLSMSAHFDRDDIALRNIAKFFKEQSDEERGHATELMRIQAVRGGRV 76
>AF106592-2|AAK21364.1| 170|Caenorhabditis elegans Ferritin protein
2 protein.
Length = 170
Score = 31.5 bits (68), Expect = 0.71
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +1
Query: 256 LKRSYHYLLSASYFNNYQTNREGFAKLFRKLSDDSWEKTIGLIKHVTKRGGKM 414
L SY YL + YF+ AK F++ SD+ E L++ RGG++
Sbjct: 24 LYASYVYLSMSFYFDRDDVALPNIAKFFKEQSDEEREHATELMRVQNLRGGRV 76
Score = 31.1 bits (67), Expect = 0.93
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +3
Query: 579 HDAEITQYIEEEFVSQQADTIRSLAGHTSDLKR 677
+DA +T +IEE+++ +Q +I A ++LKR
Sbjct: 121 NDAHLTDFIEEKYLDEQVKSINEFARMVANLKR 153
>U39678-4|AAK39211.2| 330|Caenorhabditis elegans Hypothetical
protein C39D10.3a protein.
Length = 330
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Frame = +1
Query: 121 GRLMLSERRPRMQT----DFKSAALQRVLRPIQGQP 216
GRLML ++ M+T DFKSA L L P+ +P
Sbjct: 115 GRLMLVTKKHHMETDSILDFKSAILPFALDPLSNEP 150
>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical protein
F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 552 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 701
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
protein F21G4.2 protein.
Length = 1573
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/50 (36%), Positives = 22/50 (44%)
Frame = +3
Query: 552 EVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGHTSDLKRFITENNGK 701
E T D+ DA I + I EEF + TI D R I N+GK
Sbjct: 1496 EATAAVDVSTDALIQKTIREEFANATVLTIAHRLNTIMDYDRIIVLNDGK 1545
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 603 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 722
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = +3
Query: 603 IEEEFVSQQADTIRSLAGHTSDLKRFITENNGKDLSLAVY 722
IEE+F S+ AD ++ L ++KR++ E + + + ++
Sbjct: 363 IEEDFCSKPADLVQELRFCMEEIKRYLDEQDSTEKNRIIW 402
>Z98261-1|CAB10931.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/101 (19%), Positives = 38/101 (37%)
Frame = +1
Query: 148 PRMQTDFKSAALQRVLRPIQGQPRCSERTEGISLTVLKRSYHYLLSASYFNNYQTNREGF 327
P + DF QR +P++ P + + + S+ + A + +
Sbjct: 155 PAKKIDFAKKMEQRQKKPVKQVPEMNSKANQVQCPTNYASFCGSILADHMRQNKKASLAA 214
Query: 328 AKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDK 450
LFR K I KHV + ++ S+T ++ +K
Sbjct: 215 PSLFRVFGTPQRSKMIVPAKHVQCQDERLAIYSYTPIRVNK 255
>Z71266-11|CAA95847.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/101 (19%), Positives = 38/101 (37%)
Frame = +1
Query: 148 PRMQTDFKSAALQRVLRPIQGQPRCSERTEGISLTVLKRSYHYLLSASYFNNYQTNREGF 327
P + DF QR +P++ P + + + S+ + A + +
Sbjct: 155 PAKKIDFAKKMEQRQKKPVKQVPEMNSKANQVQCPTNYASFCGSILADHMRQNKKASLAA 214
Query: 328 AKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDK 450
LFR K I KHV + ++ S+T ++ +K
Sbjct: 215 PSLFRVFGTPQRSKMIVPAKHVQCQDERLAIYSYTPIRVNK 255
>Z71258-16|CAA95786.1| 920|Caenorhabditis elegans Hypothetical
protein C01H6.9 protein.
Length = 920
Score = 27.9 bits (59), Expect = 8.7
Identities = 20/101 (19%), Positives = 38/101 (37%)
Frame = +1
Query: 148 PRMQTDFKSAALQRVLRPIQGQPRCSERTEGISLTVLKRSYHYLLSASYFNNYQTNREGF 327
P + DF QR +P++ P + + + S+ + A + +
Sbjct: 155 PAKKIDFAKKMEQRQKKPVKQVPEMNSKANQVQCPTNYASFCGSILADHMRQNKKASLAA 214
Query: 328 AKLFRKLSDDSWEKTIGLIKHVTKRGGKMDFSSHTTLKGDK 450
LFR K I KHV + ++ S+T ++ +K
Sbjct: 215 PSLFRVFGTPQRSKMIVPAKHVQCQDERLAIYSYTPIRVNK 255
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 526 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 702
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 703 TCLSP 717
LSP
Sbjct: 257 RSLSP 261
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 526 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 702
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 703 TCLSP 717
LSP
Sbjct: 257 RSLSP 261
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +1
Query: 526 PRGFSSSTGKSLKTATSSTMLRSLNTSRRNS*VSKPIRFVASRVTPRTSSG-S*PRTTGK 702
PRG + + SL T S S++T V P VAS TP TSS R K
Sbjct: 198 PRGNTDFSALSL-LGTDSPTTHSVSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRK 256
Query: 703 TCLSP 717
LSP
Sbjct: 257 RSLSP 261
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 27.9 bits (59), Expect = 8.7
Identities = 31/149 (20%), Positives = 59/149 (39%), Gaps = 2/149 (1%)
Frame = +3
Query: 300 QLPDEQGRIREALQEIIGRFVGENHWSHKARH*EGWEDGLLESHHTEXXXXXXXXXXXXX 479
+LP+E+ + EA + +H SH+ G G HH E
Sbjct: 869 RLPEEKQKAVEASLPFYEKLWYGDHASHQGHEGHGDHSGHNHHHHKETSFGCKLKSTLSG 928
Query: 480 XDRSPGQSLGTQKQLAERIFFIHREVTKNSDLLHDAEITQYIEEEFVSQQADTIRSLAGH 659
R + LG+ K L + I ++ + LL + + T ++E+F +Q + ++
Sbjct: 929 LMRFKRERLGSWKHLEQISNVIADKIKEFFHLLPEQKQTD-VKEKFQNQCMTWAKEVSKP 987
Query: 660 T--SDLKRFITENNGKDLSLAVYLFDEYL 740
T ++K+ + L L + +E L
Sbjct: 988 TEWEEIKKLHAAEDFNTLKLKLVELEERL 1016
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,050,707
Number of Sequences: 27780
Number of extensions: 312739
Number of successful extensions: 914
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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