Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0051
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    24   1.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.2  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   5.6  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   7.4  

>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +1

Query: 508 LCLATSSVV*NIVNLIYYRRRLVS*VAK-*SIERNSEYT*IACFCFYTTL 654
           LC+ T+ V  + +++IYYR+ + + +++  SI      T +  F  YT L
Sbjct: 33  LCVVTALVTPSALSIIYYRQPIYAKISETKSIVAMVMGTIVNAFSCYTVL 82


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 423 RVVIINPIKNMYLESTDVYR 482
           R ++  PI N Y E+  VYR
Sbjct: 767 RGILFVPIPNKYYEAKQVYR 786


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = -3

Query: 279 SCSTSPYSGAPRPYLA 232
           +   SPYSG P P ++
Sbjct: 307 AAGASPYSGTPTPMMS 322


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 624 NSLFLFLYDIVFLNCCNNSINKL 692
           NSLF +   +V  +CC  +++ L
Sbjct: 238 NSLFGYQIILVIFDCCLETVSAL 260


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,271
Number of Sequences: 336
Number of extensions: 3523
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)