Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0051
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo...    86   4e-18
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    28   1.1  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.6  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   4.6  
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr...    26   6.0  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    26   6.0  
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    26   6.0  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    26   6.0  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    25   8.0  
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    25   8.0  

>SPBC23G7.05 |sui1|psu1|translation initiation factor
           eIF1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 86.2 bits (204), Expect = 4e-18
 Identities = 42/66 (63%), Positives = 51/66 (77%), Gaps = 1/66 (1%)
 Frame = +1

Query: 40  SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 216
           +IQN NT DPFAD   + +DD Q    +H+RIQQRNGRKTLTTVQGL  E+D K+I+RA 
Sbjct: 3   AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59

Query: 217 KKEFAC 234
           KK+FAC
Sbjct: 60  KKDFAC 65



 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = +2

Query: 257 EYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
           + GEV+QLQGDQR  + ++LT+   ++ + +K+HGF
Sbjct: 74  DLGEVIQLQGDQRIKVMEFLTQQLGLQKKNIKIHGF 109


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = -3

Query: 99  VLRAFDSIGEWVECVEILDGHTIERRVSLFQR 4
           +LR   S+  W+  ++  +G T+E+RV LF+R
Sbjct: 25  LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFER 56


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 588 KIINRTK**IYLNSLFLFLYDIVFLNCCNNSINKLTCFC 704
           KII+R    +Y++ +FLFL  +V + C   + N  + FC
Sbjct: 28  KIIHRL---LYISIIFLFLNYVVDIVCYVKNYNGFSFFC 63


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +3

Query: 444 IKNMYLESTDVYREKRTRLSAPVPCDFLCCIKYCKSYILSPPSRLISCKIINRTK 608
           ++ +YL   D  RE  +RL        L   K+CK  +     R++   ++ R K
Sbjct: 169 VEVLYLVEKDFQRELSSRLLRTAHMLLLVLHKHCKGAVEGYQKRMLHDTVVERNK 223


>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 456 YLESTDVYREKRTRLSAPVPCDFLCCIKYCKSYILSPPSRLI 581
           Y+ES   +  K    + P+PC     +++  +YI  PP+ +I
Sbjct: 337 YIESPISWNLKYFISALPLPCFLSVQLRWFITYIFHPPAAMI 378


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 573 RLISCKIINR-TK**IYLNSLFLFLYD--IVFLNCCNNSINKLTCF 701
           RL++   +N  TK    ++++FLFL    + FL+C ++ I  L CF
Sbjct: 132 RLVTLYYLNYLTKYLELMDTVFLFLKKKPLAFLHCYHHGITALLCF 177


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 324 DLVSHWQIFSRWSP*SCSTSPYSGAPRPYLAR 229
           D +S WQI S W    CS  P S  P   + R
Sbjct: 106 DRMSFWQIPSPWMYTRCSDWPLSYLPNQVIRR 137


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
 Frame = -2

Query: 685 LIELLQQFKNTMSYKNKNKLFRYIHYF----VRLIILQLMRRDGGDNI*DLQYFIQQRKS 518
           + EL+ Q+ ++ +    N+LF  I YF    +R+ IL L R+     +  L Y+I+  K+
Sbjct: 467 MAELVLQYLSSDTQTRLNRLFLSIKYFSEKAMRVFILLLQRQVKYSEL--LNYYIECCKN 524

Query: 517 QGTGADNRVLFSL*TSVLSKYIFLI 443
              G  +    S+ T+ L K I +I
Sbjct: 525 YNGGVMDNDEESI-TNKLKKVIDII 548


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 118 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFA 231
           V ++  +R  RK +TTVQGL +   + KK  +    +FA
Sbjct: 99  VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFA 137


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = +1

Query: 1   VSLKQRDPTFNRMSIQNLNTFDPFAD-AIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGL 177
           V  +   P     S++ L   D     AI     D +  + H R+Q +N R T    QG+
Sbjct: 50  VEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQGI 109

Query: 178 SS 183
            S
Sbjct: 110 ES 111


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,342
Number of Sequences: 5004
Number of extensions: 59154
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)