Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0051
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0992 - 33644712-33644726,33644769-33644822,33644915-336451... 72 5e-13
07_03_0685 - 20679883-20679927,20680034-20680087,20680179-206803... 69 5e-12
05_05_0359 + 24393254-24393260,24393952-24394163,24394243-243942... 66 3e-11
04_04_1237 - 31991817-31992569,31993452-31993550,31994343-319949... 60 1e-09
07_01_0119 - 908600-909592,909685-909885 31 0.89
06_01_0771 - 5768086-5768090,5768905-5769156,5769282-5769660 29 2.7
04_03_0685 + 18687520-18687787,18688637-18688725,18689102-186891... 29 4.8
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415... 28 8.3
>01_06_0992 -
33644712-33644726,33644769-33644822,33644915-33645126,
33645436-33645472
Length = 105
Score = 71.7 bits (168), Expect = 5e-13
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Frame = +1
Query: 37 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 207
+ +Q + FDPFA+A + + V G VHVRIQQRNGRK+LTTVQGL EY KI+
Sbjct: 4 LDVQLPSAFDPFAEA-NAEDSSVGAGSKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKIL 62
Query: 208 RACKKEFAC 234
+ KKEF C
Sbjct: 63 KDLKKEFCC 71
Score = 35.1 bits (77), Expect = 0.055
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +2
Query: 254 PEYGEVLQLQGDQRENICQWLTKSGLV 334
PE G+V+QLQGDQR+N+ +L + +
Sbjct: 79 PELGQVIQLQGDQRKNVATFLVQIAFI 105
>07_03_0685 -
20679883-20679927,20680034-20680087,20680179-20680390,
20680476-20680550,20683094-20683168,20686196-20686264,
20686349-20686502,20686577-20686654,20689102-20689194,
20689491-20689640,20690134-20690268,20691009-20691098,
20691412-20691453,20691796-20692053,20692131-20692207,
20693126-20693186,20693687-20693905,20694936-20695208,
20695314-20695505,20695841-20696011
Length = 840
Score = 68.5 bits (160), Expect = 5e-12
Identities = 36/69 (52%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Frame = +1
Query: 37 MSIQNLNTFDPFADAIKSSEDDVQDG---LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIV 207
+ IQ FDPFA+A + + G VHVRIQQRNGRK+LTTVQGL E+ KI+
Sbjct: 729 LDIQIPTAFDPFAEA-NAGDSGAAAGSKDYVHVRIQQRNGRKSLTTVQGLKKEFSYNKIL 787
Query: 208 RACKKEFAC 234
+ KKEF C
Sbjct: 788 KDLKKEFCC 796
Score = 55.6 bits (128), Expect = 4e-08
Identities = 21/37 (56%), Positives = 31/37 (83%)
Frame = +2
Query: 254 PEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
PE G+V+QLQGDQR+N+ +L ++G+VK E +K+HGF
Sbjct: 804 PELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 840
>05_05_0359 +
24393254-24393260,24393952-24394163,24394243-24394296,
24394400-24394444
Length = 105
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/60 (56%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Frame = +1
Query: 64 DPFADAIKSSEDDVQDGL---VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 234
DPFA+A + + G VHVRIQQRNGRK+LTTVQGL EY KI++ KKEF C
Sbjct: 3 DPFAEA-NAEDSGAGPGAKDYVHVRIQQRNGRKSLTTVQGLKKEYSYNKILKDLKKEFCC 61
Score = 52.8 bits (121), Expect = 3e-07
Identities = 19/37 (51%), Positives = 30/37 (81%)
Frame = +2
Query: 254 PEYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
PE G+V+QLQGDQR+N+ +L ++G+ K + +K+HGF
Sbjct: 69 PELGQVIQLQGDQRKNVATFLVQAGIAKKDNIKIHGF 105
>04_04_1237 -
31991817-31992569,31993452-31993550,31994343-31994976,
31995329-31995585
Length = 580
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = +1
Query: 118 VHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFAC 234
VHVR+QQRNGRKTLTTVQG+ EY+ K++R K+E C
Sbjct: 498 VHVRVQQRNGRKTLTTVQGIGGEYNYAKVLRDLKRELCC 536
Score = 47.2 bits (107), Expect = 1e-05
Identities = 17/36 (47%), Positives = 28/36 (77%)
Frame = +2
Query: 257 EYGEVLQLQGDQRENICQWLTKSGLVKPEQLKVHGF 364
E G+++QLQGD R ++ +L K+G+V+ + +KVHGF
Sbjct: 545 ELGKIIQLQGDHRNSVSDFLAKAGMVRKDNIKVHGF 580
>07_01_0119 - 908600-909592,909685-909885
Length = 397
Score = 31.1 bits (67), Expect = 0.89
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Frame = -2
Query: 325 GFGEPLANILSLVALKLQHLAVLRCSTTVPCTRTPSCMPARSSSGHIPRKGLAP*SASYA 146
G G P A ++ + H R V T +C P R+ H PR G A
Sbjct: 309 GGGGPAAARMARALFRHAHNVARRGGARVVATEVGACEPLRAGVPHWPRLG-ADDLWCIK 367
Query: 145 RFVAGYGRG-LNHLERRPP 92
R GYG G L + PP
Sbjct: 368 RLADGYGDGALGDWSKAPP 386
>06_01_0771 - 5768086-5768090,5768905-5769156,5769282-5769660
Length = 211
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 283 LKLQHLAVLRCSTTVPCTRTPSCMPA 206
L+ LA+L C T P T TPSC A
Sbjct: 36 LEYTSLALLSCQETTPTTPTPSCCDA 61
>04_03_0685 +
18687520-18687787,18688637-18688725,18689102-18689195,
18689237-18689304,18690300-18690383,18690458-18690745,
18691474-18691626
Length = 347
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = -1
Query: 287 RPEAAAPRRTPVLHDRTLHANSFLHAR 207
R AAP RTP+ HD+ LH S + R
Sbjct: 5 RRPPAAPHRTPIHHDKRLHLFSTHNTR 31
>06_01_0581 -
4153668-4153883,4154070-4155104,4155718-4156292,
4158457-4158826,4159925-4160590,4161008-4161223,
4161725-4161793
Length = 1048
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +3
Query: 420 LRVVIINPIKNMYLESTDVYREKRTRLSAPVPCDFLCCIKYCKSYILSPPSRLISCKIIN 599
L +++I + N LE+ T++ + VPC F+C SY +SC +I
Sbjct: 783 LGMLLIVDVSNGQLENIQRQARDFTQMRSQVPCKFVCLTDLRTSYKDFRRFEEMSCDLIL 842
Query: 600 R 602
R
Sbjct: 843 R 843
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,709,511
Number of Sequences: 37544
Number of extensions: 393093
Number of successful extensions: 1029
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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