Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0050
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.88 
SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces...    27   3.5  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    27   3.5  
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c...    26   4.7  
SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subun...    26   6.2  
SPBC1734.09 |||NST UDP-N-acetylglucosamine transporter|Schizosac...    26   6.2  
SPAC29A4.20 |||RNA polymerase II elongator complex, histone acet...    25   8.2  

>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 13/68 (19%), Positives = 36/68 (52%)
 Frame = -2

Query: 624 IWRLVVIGVHRHQKIQM*GKDKARAVLVSMRRDKQSPKSATNFCKDFYDEEISFFLLHTS 445
           ++  V +G+   +++++ G +K +   V++ +    P++ + F +  + +E+S  + H  
Sbjct: 312 VFMRVKVGIPLFERLKV-GTNKVKNNSVNIAQSFLEPQTRSTFLRYLFSDEVSVKVCHVL 370

Query: 444 GRAHSPSG 421
               SP+G
Sbjct: 371 KELRSPTG 378


>SPBC2D10.13 |est1||telomerase regulator Est1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 490

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 193 ICLHDDAQSSLLN*SLNVIRFNRRCS*AVQF-FVS 294
           +C  D  +S+LLN    +I F RRC  AV F FVS
Sbjct: 237 LCSEDPPKSALLNLLKQLIAFYRRCF-AVHFEFVS 270


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 624 YRELIYLDSAINKYVLSS*YSQITQTKK 707
           +R L YL+   N Y+L + Y ++  TKK
Sbjct: 292 FRRLQYLEGRWNMYMLLNEYQELADTKK 319


>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 634 SSRYLAFSCYRSP*ASENPDV 572
           SS ++AFSC + P  SEN +V
Sbjct: 37  SSPFMAFSCTQKPSVSENENV 57


>SPAC8C9.03 |cgs1||cAMP-dependent protein kinase regulatory subunit
           Cgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 528 DKQSPKSATNFCKDFYDEEI 469
           D+Q+P     FC DF+ E++
Sbjct: 15  DEQNPSDVLQFCYDFFGEKL 34


>SPBC1734.09 |||NST UDP-N-acetylglucosamine
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 316

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 462 FLLHTSGRAHSPSGVMWLLDNT 397
           F +HT G  + PSGV +L  NT
Sbjct: 216 FAIHTKGFLNLPSGVWYLCFNT 237


>SPAC29A4.20 |||RNA polymerase II elongator complex, histone
           acetyltransferase subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 192 YLSARRCSELTSELIIKRNQ 251
           +L A+ C+E+ +ELI   NQ
Sbjct: 8   FLKAKACAEIVAELIASENQ 27


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,816,995
Number of Sequences: 5004
Number of extensions: 54245
Number of successful extensions: 123
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)