Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0050
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0648 - 26403249-26403357,26405142-26405284,26405425-264056...    31   1.2  
07_01_0125 - 944207-945778                                             30   2.1  
12_02_1015 + 25331667-25332169,25333305-25333406,25333775-253339...    28   8.5  

>03_05_0648 -
           26403249-26403357,26405142-26405284,26405425-26405675,
           26405707-26405713
          Length = 169

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 536 IDTNTARALSLPYIWIF*CLWTPITTKRQISRAHLPR 646
           + T T R L   Y      LWT I+ K++ S  HLPR
Sbjct: 30  VTTTTRRHLMNKYSGYLNSLWTEISNKKKNSTGHLPR 66


>07_01_0125 - 944207-945778
          Length = 523

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 132 RLLILKYVTHSLKYDSWNANYLSARRCSELTSELII 239
           RLL++  +T  +  D W   Y S+R C    S++II
Sbjct: 277 RLLVVVELTEDVSDDEWRRMYSSSRSCISAGSKIII 312


>12_02_1015 +
           25331667-25332169,25333305-25333406,25333775-25333919,
           25334002-25334186,25334297-25334401,25334507-25334604,
           25334686-25334924,25335030-25335123,25335190-25335275,
           25335579-25335677,25335804-25335869
          Length = 573

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 515 PNPQRIFVKTSTMKKLVFFYCIRVDAL 435
           PN Q++ +K + +KKL  + C  +DAL
Sbjct: 435 PNYQKLIIKHANLKKLSLWGCSALDAL 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,424,839
Number of Sequences: 37544
Number of extensions: 327081
Number of successful extensions: 501
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)