Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0050
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   5.0  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   6.7  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   8.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.8  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +2

Query: 332 GSRCNYTQTLKLISQGG*RIYVVLSSNHITPD 427
           G+R  +   +   ++ G RIYV +  NH++ D
Sbjct: 92  GTREQFIDMVARCNKAGVRIYVDVIMNHMSGD 123


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 497 KFVADLGLCLSRRIDTNTARALSLPYIWI 583
           +    +GL LS+ ID N    +    +W+
Sbjct: 45  RLTVKMGLRLSQLIDVNLKNQIMTTNVWV 73


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 503 VADLGLCLSRRIDTNTARALSLPYIWI 583
           V  LGL LS+ ID N    +    +W+
Sbjct: 47  VVKLGLRLSQLIDLNLKDQILTTNVWL 73


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -1

Query: 421 CYVVTG*HNVNASPTLRYKFQGLSIVTTASPPFKPKRI 308
           C + T  +    SP +  K  G        PP  PKRI
Sbjct: 608 CVLKTDTNQSCPSPPVTTKRDGTQETEERLPPLPPKRI 645


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,176
Number of Sequences: 438
Number of extensions: 3339
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)