Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0049
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0405 - 17767303-17767665,17767815-17768039,17768115-177683... 142 4e-34
02_04_0096 + 19669428-19669525,19670770-19670818,19671041-196711... 51 1e-06
06_01_0729 + 5367796-5368071,5368390-5368483,5368708-5368782,536... 37 0.015
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400... 36 0.045
05_06_0166 + 26093618-26095381,26095820-26096039,26096345-260966... 32 0.56
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 32 0.56
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933... 31 1.3
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 30 1.7
04_04_0835 + 28538032-28539006,28539113-28539203,28539291-285394... 29 3.0
04_01_0376 - 4929447-4929731 29 5.2
01_06_1292 - 36037741-36039306 29 5.2
03_02_0801 + 11343227-11343885,11344018-11344087,11344362-113444... 28 6.9
06_03_0897 + 25762154-25763056,25764189-25764800 28 9.1
>07_03_0405 -
17767303-17767665,17767815-17768039,17768115-17768342,
17768607-17768621,17768622-17768810,17769106-17769213,
17769917-17770045
Length = 418
Score = 142 bits (343), Expect = 4e-34
Identities = 62/78 (79%), Positives = 67/78 (85%)
Frame = +1
Query: 511 MVIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHP 690
MVIVS ILERD H +I+WNTAVVI + GN+IG HRKNHIPRVGDFNES YYMEGNTGHP
Sbjct: 187 MVIVSPILERDVNHGEIVWNTAVVIGNHGNIIGIHRKNHIPRVGDFNESTYYMEGNTGHP 246
Query: 691 VFATRYGKIAVNICFGRH 744
VF T YGKI VNIC+GRH
Sbjct: 247 VFETAYGKIGVNICYGRH 264
Score = 106 bits (255), Expect = 2e-23
Identities = 54/95 (56%), Positives = 65/95 (68%), Gaps = 5/95 (5%)
Frame = +2
Query: 239 PENCEVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQ-----ELWNM 403
P VG++Q+SIA+PT +QKKAI KVK +ID AG GVNI+C Q E W M
Sbjct: 93 PRVIRVGLIQNSIAIPTTSHFADQKKAIMEKVKPMIDAAGDAGVNILCLQVSQLSEAWTM 152
Query: 404 PFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKY 508
PFAFCTREK+ WCEFAE DG +T FL++LA KY
Sbjct: 153 PFAFCTREKR-WCEFAEPV-DGESTQFLQQLAKKY 185
>02_04_0096 +
19669428-19669525,19670770-19670818,19671041-19671132,
19671235-19671386,19671478-19671524,19671617-19671650,
19671769-19671935,19672070-19672166,19672239-19672408
Length = 301
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/64 (34%), Positives = 36/64 (56%)
Frame = +1
Query: 544 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAV 723
E+ ++ +N+ +I G +G +RK+HIP + E Y+ G+TG F T+Y I V
Sbjct: 98 EEANNAHYNSVAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKAFKTKYATIGV 157
Query: 724 NICF 735
IC+
Sbjct: 158 GICW 161
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/55 (27%), Positives = 31/55 (56%)
Frame = +2
Query: 335 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELA 499
+++I A ++G NI+ QEL+ + FC ++ + + A+ + PT ++LA
Sbjct: 32 ERLIREAHKKGANIVLVQELFEGQY-FCQAQRLDFFQRAKPYKGNPTIIRFQKLA 85
>06_01_0729 +
5367796-5368071,5368390-5368483,5368708-5368782,
5368919-5368997,5369155-5369170,5369260-5369346,
5369451-5369533,5369616-5369769
Length = 287
Score = 37.1 bits (82), Expect = 0.015
Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +1
Query: 544 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRV---GD--FNESNYYMEGNTGHPVFATRY 708
E+ S L+NT VI G + KHRK H+ + GD F ES+ + G + T
Sbjct: 67 ERSSGRLFNTCCVIGPDGQIKAKHRKLHLFEIDIPGDITFRESDTFTAGQE-PTIVDTDV 125
Query: 709 GKIAVNIC 732
G+I + IC
Sbjct: 126 GRIGIGIC 133
>03_01_0535 +
4006284-4006418,4006483-4006599,4007363-4007587,
4008112-4008205,4008587-4008661,4009045-4009123,
4009385-4009400,4009441-4009584,4009822-4009904,
4010012-4010093
Length = 349
Score = 35.5 bits (78), Expect = 0.045
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Frame = +1
Query: 544 EKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRY 708
E+ + L+NT V G + GKHRK H IP F ES G V T
Sbjct: 134 ERSGNKLYNTCCVFGSDGELKGKHRKIHLFDIDIPGKITFKESKTLTAGQ-DLTVVDTDV 192
Query: 709 GKIAVNICF 735
G+I + IC+
Sbjct: 193 GRIGIGICY 201
>05_06_0166 +
26093618-26095381,26095820-26096039,26096345-26096674,
26097481-26098029,26098366-26098426,26099737-26099824,
26100240-26100299
Length = 1023
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 397 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSYFTILGGRVCSSL 218
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 525 PKLKECDIVNTLQWISTSEGLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISMSL 584
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 31.9 bits (69), Expect = 0.56
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 397 PQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDWTIGGHRDGMLNYSYFTILGGRVCSSL 218
P+L E D VNTL + + LD + L+ + G RD + ++LG R+ SL
Sbjct: 521 PKLKECDIVNTLQWISTSESLDVDRDALKLIASRSDGSLRDAEMTLDQLSLLGQRISLSL 580
>12_02_0453 +
19192060-19192301,19192477-19192559,19193246-19193328,
19193616-19193668,19194041-19194169,19194585-19194643,
19195317-19195429,19195571-19195663,19195810-19195912,
19196233-19196315,19196407-19196448
Length = 360
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Frame = +1
Query: 541 DEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATR 705
D+ H +NT V+I D+G + +RK H +P + ES + G+T V +
Sbjct: 171 DDSHQ---YNTHVLIDDSGEIRSSYRKIHLFDVDVPGNMVYKESRFTTAGDTVVAV-DSP 226
Query: 706 YGKIAVNICF 735
+G++ + +C+
Sbjct: 227 FGRLGLTVCY 236
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +1
Query: 562 LWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICF 735
L+NT + G +GKHRK + G + +G+T PV+ T GKI IC+
Sbjct: 139 LYNTVLFFDPLGKYLGKHRK--VMPTGLERVFWGFGDGST-IPVYDTPIGKIGAVICW 193
>04_04_0835 +
28538032-28539006,28539113-28539203,28539291-28539448,
28539543-28539594,28539707-28539786,28539890-28539983,
28540078-28540633,28541160-28541259,28541576-28541617,
28542445-28542588
Length = 763
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 468 PSSADSANSHHGCFSLVQNAKGMFHNSWKQMMLTPSW 358
PS+ S N F L++N NSW Q+++T W
Sbjct: 628 PSTTASVNLDESQFKLLRNCFQGTSNSWGQVIVTAGW 664
>04_01_0376 - 4929447-4929731
Length = 94
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 718 RSCRIWSQIQDGRCYLPCSSW 656
RSC W +Q GRC CS+W
Sbjct: 63 RSCAAW--LQQGRCSAGCSAW 81
>01_06_1292 - 36037741-36039306
Length = 521
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 227 ADPTPENCEVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDV 352
ADP PE+C G I + T P + + +A F++ ++++
Sbjct: 449 ADPMPEHCPHGEFVREIPLATRIPEDAKLEAYFDEAAAVLEI 490
>03_02_0801 +
11343227-11343885,11344018-11344087,11344362-11344433,
11344511-11344980,11345626-11346598
Length = 747
Score = 28.3 bits (60), Expect = 6.9
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 441 HHGCFSLVQNAKGMFHNSWKQMMLTPSWP--ATSMIFLTLLKIAFF 310
H C ++++ + G+ N W+ + PS+P SMI L + F
Sbjct: 649 HSSCRNVIERSFGVLKNKWRILFHLPSYPQQKQSMIICACLALHNF 694
>06_03_0897 + 25762154-25763056,25764189-25764800
Length = 504
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +1
Query: 391 VVEHALRVLHKGEAAVVRVCRIS*RRADHDLPSGTRHQVPMVIVSS-ILERDEKH 552
V++ LR+ G ++RVCR + + D+P GT MV+V+ + RD K+
Sbjct: 360 VIKETLRLHPPGPRLLLRVCRTTCQVLGFDVPKGT-----MVLVNMWAINRDPKY 409
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,749,274
Number of Sequences: 37544
Number of extensions: 482160
Number of successful extensions: 1461
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1459
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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