Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0048
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757...    30   1.4  
03_06_0380 + 33518309-33518464,33518978-33519064,33519155-335194...    29   3.3  
02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777     29   3.3  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    27   7.5  
01_04_0056 + 15476868-15476896,15477581-15478259                       27   7.5  

>01_06_0969 -
           33472588-33474480,33475543-33475623,33475692-33475740,
           33475866-33476281,33477208-33477447
          Length = 892

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +1

Query: 241 RASPGPDTYPPSTAPAQHLFVHIGGTVTYADPLLESVDVQQKND 372
           R  P P   PP   P  H  + +G  V   D LL +V   + +D
Sbjct: 269 RPKPQPPPPPPPPTPPAHKTLPVGDAVALEDELLAAVSEDRSDD 312


>03_06_0380 +
           33518309-33518464,33518978-33519064,33519155-33519400,
           33519559-33519723,33519920-33519973,33520079-33520225,
           33520916-33521293
          Length = 410

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 313 RLCERRDVAPAPCSVGTYQDPGMLDEGGELYESQFVCGD 197
           R  ++R  AP P SV    DP +L+EGG  +   +V GD
Sbjct: 138 RYGKKRHPAPNPMSV----DPNLLNEGGHQHAIAYVQGD 172


>02_03_0145 - 15715181-15715834,15716049-15716271,15717318-15718777
          Length = 778

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 116 CSPHRGKASHPVMCRLVGLAAKIAL 42
           C+P    ASHP+ CR + L   +AL
Sbjct: 92  CAPAAAAASHPLRCRALELCFNVAL 116


>11_01_0039 -
           290960-291086,291615-291714,291809-292013,292466-292513,
           295071-295646,295828-296260,296470-297338,297433-298227,
           298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 384 EEGRSEGTVRERSEERLLPGQV 449
           E+G  EG  RER EER++ G +
Sbjct: 64  EKGEEEGEERERREERIICGAI 85


>01_04_0056 + 15476868-15476896,15477581-15478259
          Length = 235

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 244 ASPGPDTYPPSTAPAQHLFVH 306
           A+P P+T P  T PA HL +H
Sbjct: 86  ATPKPNTPPDPTRPAPHLTLH 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,713,215
Number of Sequences: 37544
Number of extensions: 216110
Number of successful extensions: 755
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)