Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0048
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical ...    27   6.8  
AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical ...    27   6.8  

>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical
           protein C25H3.8 protein.
          Length = 2148

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 358 QQKNDKFPXXXXXXXXXXXXXPRNAFFLVKFWADLNTNNLDDPGAFYGV 504
           Q+KN +FP             PR     V  W +++  N+D  G ++ V
Sbjct: 828 QEKNFEFPARLLLYSHLEREPPRQLIVRVSGWDEISPVNVDSCGTYFRV 876


>AF106589-7|AAN73853.1|  843|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6b protein.
          Length = 843

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 250 PGPDTYPPSTAPAQHLFVHIGGTVTYADPLLESVDVQQKNDK 375
           P P  Y  +  P      + GG +    P   S+DV+  N K
Sbjct: 488 PSPSVYVDTETPEHQQLQNSGGLLMKVAPQTSSIDVESVNQK 529


>AF106589-6|AAN73852.1|  841|Caenorhabditis elegans Hypothetical
           protein Y44E3A.6a protein.
          Length = 841

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/42 (28%), Positives = 17/42 (40%)
 Frame = +1

Query: 250 PGPDTYPPSTAPAQHLFVHIGGTVTYADPLLESVDVQQKNDK 375
           P P  Y  +  P      + GG +    P   S+DV+  N K
Sbjct: 488 PSPSVYVDTETPEHQQLQNSGGLLMKVAPQTSSIDVESVNQK 529


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,084,351
Number of Sequences: 27780
Number of extensions: 159105
Number of successful extensions: 403
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)