Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0048
         (553 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.17 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.8  
DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    21   6.3  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    21   6.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +1

Query: 250 PGPDTYPPSTAPAQHLFVHIGGTVTY-ADPLLESVDVQ 360
           PG    PP T P       +G T+T+  DP   S D+Q
Sbjct: 287 PGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQ 324


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +3

Query: 390 GRSEGTVRERSEERLLPGQ-VLGG 458
           G S+  V  RSE  ++PG  VLGG
Sbjct: 38  GGSDWRVAGRSESVVIPGDIVLGG 61


>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +3

Query: 39  LKCNFSSQAYKPAHHRM*SLSPVRATKASPVXXASECR 152
           LKC        P   R+ SL+P+    A P     E R
Sbjct: 52  LKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETR 89


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +3

Query: 39  LKCNFSSQAYKPAHHRM*SLSPVRATKASPVXXASECR 152
           LKC        P   R+ SL+P+    A P     E R
Sbjct: 52  LKCALGEAPCDPVGRRLKSLAPLVLRGACPQCSPEETR 89


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 241 RASPGPDTYPPSTAPAQHLF 300
           R +PGP +  P   P  H F
Sbjct: 55  RRNPGPGSKGPRDFPRSHRF 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,931
Number of Sequences: 438
Number of extensions: 2151
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)