Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0047
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.08 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 63 3e-11
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 29 0.63
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 28 1.1
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma... 27 1.9
SPBC36.08c |cog2||Golgi transport complex subunit Cog2 |Schizosa... 27 1.9
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 27 2.6
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c... 27 3.4
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.9
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 26 5.9
SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces ... 26 5.9
>SPAC644.08 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/52 (55%), Positives = 35/52 (67%)
Frame = +2
Query: 512 GQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGAKQEATSYTAIV 667
G ++YIYSSGSV AQKL F S AG+LL G++DT +G K E SY IV
Sbjct: 108 GMRVYIYSSGSVPAQKLYFEHSDAGNLLKYFSGYYDTTIGLKTECGSYVKIV 159
Score = 52.8 bits (121), Expect = 4e-08
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Frame = +1
Query: 112 KVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWD-DEDVKEAVNA*GSLLSRIRRR 288
K LLLDIEGT SISFVKDKLFPYA + +++ ++ DE+++E L +R+
Sbjct: 3 KNLLLDIEGTVGSISFVKDKLFPYAASRYESYVNENYESDENLRELGKTPEEALINLRKL 62
Query: 289 VLKDWLPFPERMLLKRIKSRVW 354
+ + K ++ R+W
Sbjct: 63 HAEG----SKERSFKMVQGRIW 80
Score = 44.0 bits (99), Expect = 2e-05
Identities = 18/51 (35%), Positives = 32/51 (62%)
Frame = +3
Query: 345 EGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQ 497
E L+ N++ + K K +QG IWKKGY+ ++ H++ DV+PA+++
Sbjct: 54 EALI-NLRKLHAEGSKERSFKMVQGRIWKKGYESNELTSHLFPDVVPAIQR 103
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 29.1 bits (62), Expect = 0.63
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 264 LAIEDQEKSVEGLVTIPGE--DASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKG 437
L ++D EK ++ P E + KE +G V N +SSD+ ++ + L +
Sbjct: 581 LPVKDDEKDLDLRELNPLEPFENMKEQADDGTVTN-PLNVSSDKAMS----VYLLSSENA 635
Query: 438 YDKGDIKGHVYDDVLPALE 494
D GDIK D VLP LE
Sbjct: 636 KDTGDIKSESIDAVLPTLE 654
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +3
Query: 249 ERLRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLI 425
E L KL + +VT G A KED+ + ++ MS+ RKVA LK+L+G I
Sbjct: 328 EALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDL---MSAARKVADLKKLEGTI 383
>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 1.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 324 HPLREW*PVLQHSSPD 277
HP +EW LQH+SPD
Sbjct: 270 HPFKEWLLNLQHTSPD 285
>SPBC36.08c |cog2||Golgi transport complex subunit Cog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 191
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 667 DNGS-VTGSFLFSTYSSVEMAIDERK*VPSR*LAKKKFLGLDG 542
D+GS + +FL Y + E + P L K+FLGLDG
Sbjct: 7 DSGSDLVDAFLSDAYLNTEELRKDGPFSPDEFLVSKRFLGLDG 49
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/52 (28%), Positives = 28/52 (53%)
Frame = -1
Query: 167 SLTKLIDVVVPSISRSKTLLFLTISPITVFSFAISTDPHQLCRNYFYVFQNL 12
++ +I + P + SK +F+ ITVF S DP+ + N+ +V++ L
Sbjct: 182 TIRDVISLAFPVLD-SKNCVFIMDEIITVFINNSSNDPNLISENWDFVWKKL 232
>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = +1
Query: 106 KSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDED 234
+ ++ L +E T TSI + +FPY + F W +D
Sbjct: 182 QDRISALILENTFTSIKDMIPTVFPYGGSIISRFCTEIWSSQD 224
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 575 SSAGDLLPLIDGHFDTAVGAKQEATSYTAIVEKI 676
SSA +L I+G F+ A+GA + TA+++ I
Sbjct: 491 SSAPTILTDINGDFEMALGASGGSRIVTAVLDSI 524
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.8 bits (54), Expect = 5.9
Identities = 26/120 (21%), Positives = 53/120 (44%), Gaps = 6/120 (5%)
Frame = +3
Query: 237 QRSSERL-----RKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAP 401
+R S+RL + + DQ + E I ED +E+ + ++NV+W+ + +AP
Sbjct: 311 ERESQRLWYKTCQAVIARDQTTATETKSAI--EDRQREEAKQREIENVQWKPKYFKMIAP 368
Query: 402 LKQLQGLIWKKGYDKGDIKG-HVYDDVLPALEQWRSVRVRRFTSTPLDPSKPRNFFLASH 578
+ + G K D++ D+ +P + + +F S + +KP + + H
Sbjct: 369 EEYILNFDIPNG--KSDLEVLCALDEFIPIFSEVDRIAFHKFLS---ENTKPEDSSIHKH 423
>SPAC24H6.12c |uba3||NEDD8 activating enzyme|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Frame = +2
Query: 494 TMAFSEGQKIYIYSSGSVQAQK----LLFGQSSAGDLLPLIDG 610
T+ F + K+ I SV+A++ L + GDL+PL+DG
Sbjct: 127 TIEFYKEFKLIICGLDSVEARRWINSTLVAIAKTGDLIPLVDG 169
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,979,813
Number of Sequences: 5004
Number of extensions: 64548
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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