Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0047
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0330 - 16446685-16446776,16446968-16447119,16447172-164472... 80 2e-15
01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,619... 78 8e-15
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779... 29 2.6
06_01_0608 - 4399252-4399894,4401640-4402427 29 3.5
04_04_1589 - 34636563-34636856,34636982-34637159,34637349-346374... 29 3.5
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574... 29 4.6
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 4.6
>11_04_0330 -
16446685-16446776,16446968-16447119,16447172-16447281,
16447518-16447619,16447705-16447854,16448195-16448350,
16448552-16448713,16449549-16449638,16450152-16450271,
16451323-16451418,16451502-16451638,16453400-16453622
Length = 529
Score = 79.8 bits (188), Expect = 2e-15
Identities = 37/84 (44%), Positives = 54/84 (64%)
Frame = +3
Query: 255 LRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKK 434
LR ED + + G V IP +DA KE+ I LV NV+ + +DRK+ LKQLQG IW+
Sbjct: 325 LRIQVEEDLKNGIVGSVPIPPDDADKEEVINALVANVESMIKADRKITSLKQLQGHIWRT 384
Query: 435 GYDKGDIKGHVYDDVLPALEQWRS 506
G++ +++G V+DDV AL+ W +
Sbjct: 385 GFESKELQGVVFDDVPEALKHWHA 408
Score = 53.2 bits (122), Expect = 2e-07
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 1/50 (2%)
Frame = +1
Query: 103 KKSK-VLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEAV 249
K SK ++LDIEGTTT ISFV D +FPYA +NV+ L + + ++ KE +
Sbjct: 273 KSSKHCVVLDIEGTTTPISFVTDVMFPYARDNVRKHLTSTYSSDETKEDI 322
Score = 52.4 bits (120), Expect = 3e-07
Identities = 23/42 (54%), Positives = 30/42 (71%)
Frame = +2
Query: 506 SEGQKIYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVG 631
+ G K+YIYSSGS +AQ+LLFG ++ GDL + G FDT G
Sbjct: 408 ASGMKVYIYSSGSREAQRLLFGNTAYGDLRQYLCGFFDTTTG 449
>01_01_0009 + 57658-60086,60855-60935,61094-61295,61385-61905,
61996-62114,62248-62345
Length = 1149
Score = 77.8 bits (183), Expect = 8e-15
Identities = 38/87 (43%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +3
Query: 255 LRKLAIEDQEKSVEGLVTIPGEDASKEDQ---IEGLVKNVKWQMSSDRKVAPLKQLQGLI 425
LR ED + V+G V +P DA E + +E L NV+ + +DRKV LKQLQG I
Sbjct: 954 LRAQVEEDLAQGVDGAVAVP-PDAEGEGEGAVVEALAANVESMIRADRKVTALKQLQGRI 1012
Query: 426 WKKGYDKGDIKGHVYDDVLPALEQWRS 506
W++G+D G+++ VYDD AL +WR+
Sbjct: 1013 WRRGFDSGELRSEVYDDAADALRRWRA 1039
Score = 56.8 bits (131), Expect = 2e-08
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +2
Query: 518 KIYIYSSGSVQAQKLLFGQSSA-GDLLPLIDGHFDTAVGAKQEATSYTAIVEKIG 679
K YIYSSGS +AQ+L+F ++A GDL + G FDT +GAK+E +SY I + +G
Sbjct: 1040 KAYIYSSGSREAQRLIFANTAAHGDLRDHLCGFFDTTIGAKREVSSYYEIWQTLG 1094
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/60 (45%), Positives = 37/60 (61%)
Frame = +1
Query: 67 MAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKEA 246
MA ++ + D+ +V+L DIEGTTT ISFV D LFPYA +NV+ L A + + A
Sbjct: 891 MAMASSELPDLSAIQRVVL-DIEGTTTPISFVADVLFPYARDNVRRHLAATYGSSEETRA 949
>07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,
77916-78116,78463-78541,78637-78678,78788-78847,
79087-80484,80777-80902,81037-81300
Length = 1501
Score = 29.5 bits (63), Expect = 2.6
Identities = 31/119 (26%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Frame = +3
Query: 285 KSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGY-DK--GDI 455
K+ EG V I + A + L + WQ S + + +L+ L W Y DK +I
Sbjct: 736 KTTEGCVEINVDGAQLRIMLTNLKVSPVWQKVSPQDNIFICELRILTWGDVYVDKVITEI 795
Query: 456 KGHVYDDVLPALEQWRSVRV---RRFTSTPLDPSKPRNFFLASHL--LGTYFLSSMAIS 617
KG +YD + + Q + ++ S PL P + ++SH LG + +A++
Sbjct: 796 KGDLYDSPIDSKNQIVMSTLYNNDQYQSYPLCPIEAALLSMSSHTYSLGEELIGKVALT 854
>06_01_0608 - 4399252-4399894,4401640-4402427
Length = 476
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/26 (38%), Positives = 19/26 (73%)
Frame = +1
Query: 178 PYAEENVKDFLDAQWDDEDVKEAVNA 255
PY E++++ LD + D+EDV+ + +A
Sbjct: 371 PYTEDDIRKILDIRCDEEDVEMSADA 396
>04_04_1589 -
34636563-34636856,34636982-34637159,34637349-34637461,
34637713-34638316,34638401-34638581,34638674-34638816,
34638972-34639141,34639221-34639307,34639414-34639639,
34639825-34639964
Length = 711
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Frame = +1
Query: 58 SVEMAKENTV-IGDIVKKSKVLL--LDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDD 228
SV+MA E +V V+ ++ L + +E T+++ +K+ LFP E + A+W+D
Sbjct: 479 SVQMALERSVGYSGRVEAARATLDQVKVEDIDTNVAVLKELLFPLIEIGKRLLFLAEWED 538
>08_02_1236 +
25454371-25456801,25456891-25457177,25457258-25457416,
25457561-25457740,25457823-25458017,25459059-25459157,
25459508-25460137,25460250-25460591
Length = 1440
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 342 IEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIK 458
+EG +K + Q+ D+KVA K + I GY++GD K
Sbjct: 462 LEGTLK-IDQQIEGDQKVANKKVTEEEILTNGYEQGDAK 499
>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -2
Query: 526 VNLLTLTERHCSRAGSTSSYTCPLMSPLS*P---FFQISPW 413
+N+ ++ R C+R + S +CP + LS P FF + W
Sbjct: 1012 MNIYSIEVRECTRPDAAGSVSCPRLWQLSLPCIKFFSLPVW 1052
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,222,572
Number of Sequences: 37544
Number of extensions: 423866
Number of successful extensions: 1067
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -