Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0047
         (689 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical pr...    72   4e-13
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    32   0.34 
AF099913-15|AAC68744.1|  284|Caenorhabditis elegans Hypothetical...    30   1.8  
AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical ...    29   2.4  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    29   3.1  
U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.        28   5.5  
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical...    28   5.5  
AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess...    28   5.5  
AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess...    28   5.5  
Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical ...    27   9.6  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical
           protein F58H1.3a protein.
          Length = 492

 Score = 71.7 bits (168), Expect = 4e-13
 Identities = 36/82 (43%), Positives = 53/82 (64%)
 Frame = +3

Query: 249 ERLRKLAIEDQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIW 428
           E LR +A +  E  V  +V I      +++ IE + KNV+  +  D+K+ P+K LQGLIW
Sbjct: 55  EDLRHIADQQAENDV-AVVRIR---EPRKECIEDVTKNVRHWIKRDKKLTPMKALQGLIW 110

Query: 429 KKGYDKGDIKGHVYDDVLPALE 494
           ++ Y +GD+KGHVY DVLP L+
Sbjct: 111 EEAYQRGDVKGHVYPDVLPVLK 132



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 31/52 (59%), Positives = 38/52 (73%)
 Frame = +2

Query: 521 IYIYSSGSVQAQKLLFGQSSAGDLLPLIDGHFDTAVGAKQEATSYTAIVEKI 676
           IYIYSSGSV AQKLLF  S  GD+  ++ G+FDT +G K E+ SYT I E+I
Sbjct: 141 IYIYSSGSVHAQKLLFANSIEGDMTKILYGYFDTNIGLKGESNSYTKISERI 192



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/37 (70%), Positives = 32/37 (86%)
 Frame = +1

Query: 118 LLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDD 228
           LLLDIEGT TSISFVKD+LFPYA ENV ++L+  +D+
Sbjct: 11  LLLDIEGTITSISFVKDELFPYAFENVGNYLEEHYDN 47


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +3

Query: 276 DQEKSVEGLVTIPGEDASKEDQIEGLVKNVKWQMSSDRKVAPLKQ 410
           D EK       +  +D  +ED+++  +  ++ Q SSD+KV+  K+
Sbjct: 100 DDEKPASSSSKLAADDDDEEDELDAFMAGIEKQASSDKKVSEQKE 144


>AF099913-15|AAC68744.1|  284|Caenorhabditis elegans Hypothetical
           protein C29F9.1 protein.
          Length = 284

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 21/86 (24%), Positives = 37/86 (43%)
 Frame = +3

Query: 321 DASKEDQIEGLVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHVYDDVLPALEQW 500
           D  +EDQ+E      +W+ S  R VA   + Q  + +  +   D++  V++++   LE  
Sbjct: 94  DRWEEDQLENPQIKSQWKGSETRPVANFARRQQRVLRTDWKHVDVQITVWEELKKVLEAA 153

Query: 501 RSVRVRRFTSTPLDPSKPRNFFLASH 578
             V V       L+P     + L  H
Sbjct: 154 EIVDVTLNMMKTLNPDTKAMWLLKFH 179


>AL132860-3|CAB60514.2|  342|Caenorhabditis elegans Hypothetical
           protein Y56A3A.4 protein.
          Length = 342

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +1

Query: 91  GDIVKKSKV--LLLDIEGTTTSISFVKDKLFPYAEENVKDFLD 213
           G I++KSK+  L+  I  TT     VKD L  YA++ V   +D
Sbjct: 226 GSIMEKSKLDDLMQQISSTTVLEENVKDVLVEYADDFVSSLID 268


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
 Frame = +3

Query: 336 DQIEG-LVKNVKWQMSSDRKVAPLKQLQGLIWKKGYDKGDIKGHV--YDDVL-PALEQW 500
           D + G L+KN     SS +KV  + Q +        D G++  HV  YDD +   L  W
Sbjct: 773 DNLHGILIKNPSLHRSSSKKVVFIDQNKASAAASAGDSGEVPAHVRAYDDAIEEPLANW 831


>U67864-1|AAC47313.1|  415|Caenorhabditis elegans MEX-3 protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 687 ALQPIFSTMAV*LVASCLAPTAVSKWPSMRGSRSPADDWPKRSFW 553
           AL   F +M   L    L+ T +S  PS+ G +S   D P   +W
Sbjct: 276 ALLRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYW 320


>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
           protein Y43F8B.3a protein.
          Length = 1816

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 2/134 (1%)
 Frame = -2

Query: 559 FLGLDGSRGVDVNLLTLTERHCSRAGSTSSYTCPLMSPLS*PFFQISPWSCFRGATLRSD 380
           +LGL G+R    N  +  + HC       +  C +  P+        P+ C +GAT  + 
Sbjct: 504 YLGLKGNRN---NFQS--KEHCESTCPVWTNPCAIGQPIM--TVGQKPFQCHQGATCSTG 556

Query: 379 DICHLTFLTRPSI*SSLEASSPGMVTSPSTLFS*SSIASFLKRSXXXXXXXXPTGHQENL 200
             CHL +    ++    E     +V    +     S   F   +         TG   N 
Sbjct: 557 YFCHLGYDDATTVCCQSEGDPCSLVVKEGSGNHHLS-RWFYNSNTRQCQPFTYTGQGGNE 615

Query: 199 SHFL--QHKEIVCP 164
           ++FL  +H E  CP
Sbjct: 616 NNFLLREHCEATCP 629


>AF125450-3|AAD12817.1|  309|Caenorhabditis elegans Hypothetical
           protein Y39F10A.3 protein.
          Length = 309

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 530 YSSGSVQAQKLLFGQSSAGDLLPLIDG 610
           YS+G V  +K + GQ S+ D  PL+ G
Sbjct: 78  YSTGQVTTRKSVLGQVSSADQFPLLYG 104


>AF003139-9|AAK73872.1|  415|Caenorhabditis elegans Muscle excess
           protein 3, isoform a protein.
          Length = 415

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 687 ALQPIFSTMAV*LVASCLAPTAVSKWPSMRGSRSPADDWPKRSFW 553
           AL   F +M   L    L+ T +S  PS+ G +S   D P   +W
Sbjct: 276 ALLRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYW 320


>AF003139-8|AAK73873.2|  443|Caenorhabditis elegans Muscle excess
           protein 3, isoform b protein.
          Length = 443

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -3

Query: 687 ALQPIFSTMAV*LVASCLAPTAVSKWPSMRGSRSPADDWPKRSFW 553
           AL   F +M   L    L+ T +S  PS+ G +S   D P   +W
Sbjct: 304 ALLRSFPSMRSSLTPESLSGTGLSSRPSLGGGQSAKQDLPTYDYW 348


>Z79756-3|CAB02121.1|  527|Caenorhabditis elegans Hypothetical
           protein F53C11.4 protein.
          Length = 527

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +1

Query: 64  EMAKENTVIGDIVKKSKVLLLDIEGTTTSISFVKDKLFPYAEENVKDFLDAQWDDEDVKE 243
           E    N V G   KKSKV+ +    + + +S     L   A E+   +LD   DD D   
Sbjct: 43  EWVVPNDVTGLNAKKSKVVKIRFHPSVSKLSSEGSALHQAACESALKYLDLLLDDSDWTR 102

Query: 244 AVN 252
             N
Sbjct: 103 KTN 105


>AL132846-3|CAB60346.2| 1648|Caenorhabditis elegans Hypothetical
            protein Y43D4A.5 protein.
          Length = 1648

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 416  LELLQRGNFTVGRHLPFDILNQTLDL-ILFRSILSGNGNQSFNTLLLILD--SKLPQAF 249
            L+LLQR NF      PF   +   +L    R +L+ N  + ++ +   L   SK+P+ F
Sbjct: 1257 LDLLQRTNFRSATPSPFSAASDISELSTAVRQVLNANSKKGWSMMKRKLQKKSKIPKQF 1315


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
 Frame = -1

Query: 476 IVVHVSLDVSFIITFFPDKPLELLQRGNFTVGRHLPF--DILNQTL------DLILFRSI 321
           +++HVS ++ FI+ F   +P +    G  +   H P   ++ N +       D+ LF SI
Sbjct: 35  LIIHVSNNIFFILLFIYKRPRKPENPGG-SENVHAPIFRELYNLSFLCVIFDDICLFTSI 93

Query: 320 LSGNGNQSFNTLLLIL 273
           L    N++   + LI+
Sbjct: 94  LGNEKNEASGFIFLIM 109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,430,297
Number of Sequences: 27780
Number of extensions: 360115
Number of successful extensions: 1028
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)