Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0047
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.6  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   8.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 511 GSEDLHLLLWIRPSPETSFWP 573
           G+ED +LLL  R +P +S  P
Sbjct: 261 GNEDANLLLKARLNPNSSLQP 281


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -2

Query: 535 GVDVNLLTLTERHCSRAGSTSSYTCPLMSPLS 440
           G +   L   ERH  R    +S+  P M+P S
Sbjct: 230 GGESEALARLERHLERKAWVASFGRPKMTPQS 261


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 6/23 (26%), Positives = 14/23 (60%)
 Frame = +3

Query: 426 WKKGYDKGDIKGHVYDDVLPALE 494
           W   + KGD++  +  +++P L+
Sbjct: 587 WANVFAKGDMEAFLVKNIIPKLQ 609


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,875
Number of Sequences: 438
Number of extensions: 4223
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)