Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0046
         (635 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    28   0.98 
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces...    25   6.9  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    25   6.9  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.1  

>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 361 RPWASMDANNDTTMKSGDHIFKFN 290
           RP   +D NND++  S +H+  FN
Sbjct: 686 RPQLLLDDNNDSSSSSSEHLISFN 709


>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 197 SCTFSIQIVSY*NAGPKYILL 135
           +C FSIQ V   N GP Y LL
Sbjct: 186 ACLFSIQFVLDRNNGPSYSLL 206


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 122 AILCTTKYIWDRHFSTI-RFELKKCTIFFFNLISF 223
           A LCT     D H +TI RF L    + FF + +F
Sbjct: 173 ATLCTLMVALDNHLATISRFILLDSMLLFFIISTF 207


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 318 RVETTSLNLTGGN*KKQTLEIPKQNITNVNSSNDIKLKKNIVHFFNSNRIVLKCRSQIYF 139
           RV T  L    G+ K Q  EIP+  +   +S N +  +K I     +N+ V++    +Y+
Sbjct: 60  RVTTKFLQGKSGSVKVQ--EIPQDQLPKSSSDNAVTDRKTISPSGINNQYVIRNPKDVYY 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,544,689
Number of Sequences: 5004
Number of extensions: 48844
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)