Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0046
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0409 + 16837792-16837896,16839256-16839328,16839376-168397...    28   5.4  
09_04_0018 - 13826587-13827695,13827907-13827966,13828332-138283...    27   9.4  
06_01_0904 - 6964715-6965245,6965432-6965488,6965680-6965721,696...    27   9.4  

>08_02_0409 +
           16837792-16837896,16839256-16839328,16839376-16839730,
           16839995-16840106
          Length = 214

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +3

Query: 300 KMWSPLFIVVSLLASIEAHGRVESPPSRASAWRAGFPTEPDYDDDGVNCGGMW 458
           ++W  L I + L AS+E H  +++ P         F + P++D   +  GG W
Sbjct: 2   RVWCELGIKIVLQASMERHYYIDTRPMFQGNTEKVFNSAPEWD---LGTGGKW 51


>09_04_0018 -
           13826587-13827695,13827907-13827966,13828332-13828368,
           13830281-13830341,13831295-13831443
          Length = 471

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 342 SIEAHGRVESPPSRASAWRAGFPTEPDYDDDGVNCGG 452
           ++EA  R  +   RA+A  AG  T+P +    + CGG
Sbjct: 2   AVEAPCRAGAGRQRAAAALAGVHTQPPHRPAAIRCGG 38


>06_01_0904 -
           6964715-6965245,6965432-6965488,6965680-6965721,
           6965839-6965944,6966019-6966204,6966479-6966618
          Length = 353

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +3

Query: 321 IVVSLLASIEAHGRVESPPSRASAWRAGFPTEPDYDDDGVNCGGM 455
           +V +  A     G    PP+ A+A  +  P E   +DD V+C GM
Sbjct: 274 VVPAAAAPSPPPGSSSMPPTGAAAASSAPPKEEAAEDDYVHCHGM 318


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,066,229
Number of Sequences: 37544
Number of extensions: 343313
Number of successful extensions: 1065
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)