Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0046
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)         61   6e-10
SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)         55   6e-08
SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)              48   5e-06
SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)          38   0.009
SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)                30   1.8  
SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  

>SB_20442| Best HMM Match : Chitin_bind_3 (HMM E-Value=7.4e-05)
          Length = 288

 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
 Frame = +3

Query: 300 KMWSPLFIVVSLLASIEAHGRVESPPSRASAWRAGFPTEP-DYDDDGVNCGGMWHQWSYN 476
           K++S L ++ SL A    HG +++P +R    + GF   P +Y  D  NCGG+  QW  N
Sbjct: 2   KLFS-LLLIASLTALALGHGYIKNPAARNVCRKYGFDKCPREYTPDEKNCGGIGTQWDKN 60

Query: 477 RGRCGICGDR 506
            G+CG+CGDR
Sbjct: 61  GGKCGVCGDR 70



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 542 GRYGDGIIVAHYNPGAIFTTTVHLTTSHLGF 634
           G++  G I   Y  G +F   +H+T SH G+
Sbjct: 82  GKFATGTITGIYKEGQLFELELHITVSHKGW 112


>SB_28577| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.00012)
          Length = 281

 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +3

Query: 300 KMWSPLFIVVSLLASIEAHGRVESPPSRASAWRAGFPT-EPDYDDDGVNCGGMWHQWSYN 476
           K++S L ++ SL A    HG + +P +R +  + GF     ++  D  NCGG+  QW  N
Sbjct: 2   KLFS-LLLIASLTALALGHGYIRNPAARNACKQYGFEECIIEWTMDEKNCGGLSAQWKDN 60

Query: 477 RGRCGICGDR 506
            G+CG+CGDR
Sbjct: 61  GGKCGVCGDR 70


>SB_28578| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +3

Query: 321 IVVSLLASIEAHGRVESPPSRASAWRAGFP--TEPDYDDDGVNCGGMWHQWSYNRGRCGI 494
           +V S++  +  HG ++ P +R   +R  FP  T   +  D +NCGG   Q   N G+CG+
Sbjct: 9   LVASVVTLVSGHGFIQEPAARQVCYRE-FPKCTSVHWTPDELNCGGFSTQNDKNGGKCGV 67

Query: 495 CGD 503
           CGD
Sbjct: 68  CGD 70


>SB_6097| Best HMM Match : Chitin_bind_3 (HMM E-Value=0.7)
          Length = 325

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
 Frame = +3

Query: 321 IVVSLLASIEAHGRVESPPSR--ASAWRAGFPTEPDYDDDGVNCGGMWHQWSYNRGRCGI 494
           +++ ++  I  HG +  PP+R    A +   P   ++  + +NCGG  +QW    G+CG+
Sbjct: 9   VLLCVIPHISGHGYLSIPPARNYCGALKDKGPCVRNWTPNELNCGGFVYQWREAGGKCGV 68

Query: 495 CGD--R*TRRHRD 527
           CGD    T+RH +
Sbjct: 69  CGDPYGKTQRHTE 81


>SB_6096| Best HMM Match : Chitin_bind_3 (HMM E-Value=1.9e-06)
          Length = 295

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 503 SVDAPTPRPHELGGRYGDGIIVAHYNPGAIFTTTVHLTTSHLGF 634
           S   P+P PH   G+Y  G I   Y  G I +  +H+T +H G+
Sbjct: 72  SYSNPSP-PHVYPGKYATGFITQTYTQGQIISVKIHITANHQGW 114



 Score = 31.5 bits (68), Expect = 0.59
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = +3

Query: 315 LFIVVSLLASIEAHGRVESPPSRASAWRAGFPTE--PDYDDDGVNCGGMWHQWSYNRGRC 488
           L ++ + +  +  HG +  P +R + +   FP +   +Y+ +   CGG   Q + N  +C
Sbjct: 9   LSLLCNAVLLVHGHGYMIEPAARNACYMK-FPNQCVRNYNANEQFCGGRATQIA-NGNKC 66

Query: 489 GICGD 503
           G+CGD
Sbjct: 67  GVCGD 71


>SB_41264| Best HMM Match : TIL_assoc (HMM E-Value=0.87)
          Length = 770

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = -1

Query: 134 YTK*LNANVLNSKFGREMILNIDRTIVLFIFYIIFSRTK*VP 9
           + K +N+  L+  F  + +L++   IVL +F I+F  ++ VP
Sbjct: 343 HAKTINSRTLHLLFNTKRMLSVKLCIVLCVFVIVFEESRAVP 384


>SB_58926| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2371

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +3

Query: 24   TGKYYIKYKQYDSSVDI*NHFSPEFTVQNIRIKLFCVQQNIFGTGILVRYDLN*KSARYF 203
            TG  ++K    + S D   HF  E+T      K+F    NI G+G++V + +   +ARY+
Sbjct: 2117 TGDKWVKLYSVEQSDD--GHFFTEYTAGESSKKVFT--GNIDGSGVVVNWLMYPMTARYY 2172


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,466,007
Number of Sequences: 59808
Number of extensions: 389438
Number of successful extensions: 1247
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)