Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0046
         (635 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81137-10|CAB03470.2|  232|Caenorhabditis elegans Hypothetical p...    28   6.4  
Z81031-7|CAB02717.2|  267|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical pr...    27   8.5  
Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical pr...    27   8.5  
U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.        27   8.5  
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    27   8.5  
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    27   8.5  
AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormo...    27   8.5  

>Z81137-10|CAB03470.2|  232|Caenorhabditis elegans Hypothetical
           protein W02D9.2 protein.
          Length = 232

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 303 MWSPLFIVVSLLASIEAHGRVESPP 377
           +W PLFI V L   ++ +G  ES P
Sbjct: 96  LWGPLFICVGLALLLQHNGGTESAP 120


>Z81031-7|CAB02717.2|  267|Caenorhabditis elegans Hypothetical
           protein C02D4.1 protein.
          Length = 267

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 324 VVSLLASIEAHGRVESPPSRASAWRAGFPTEPDYDDDGVNCG 449
           ++ ++ S EA     S  +  ++  +G  ++PDYD  G N G
Sbjct: 60  ILDVIKSFEADSSSNSDRAEPASTTSGASSDPDYDHIGTNGG 101


>Z83107-6|CAD92391.1|  877|Caenorhabditis elegans Hypothetical
           protein F32A7.5c protein.
          Length = 877

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 340 RPSKPTVVLNRLPRAHRPGVPVSPQNQTMTTTASTAAECGI 462
           RP++P V     PRA     P  P   T T  A+ A    +
Sbjct: 254 RPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAV 294


>Z83107-5|CAD92390.1|  764|Caenorhabditis elegans Hypothetical
           protein F32A7.5b protein.
          Length = 764

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 340 RPSKPTVVLNRLPRAHRPGVPVSPQNQTMTTTASTAAECGI 462
           RP++P V     PRA     P  P   T T  A+ A    +
Sbjct: 254 RPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAV 294


>Z83107-4|CAB05498.1|  878|Caenorhabditis elegans Hypothetical
           protein F32A7.5a protein.
          Length = 878

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 340 RPSKPTVVLNRLPRAHRPGVPVSPQNQTMTTTASTAAECGI 462
           RP++P V     PRA     P  P   T T  A+ A    +
Sbjct: 254 RPTRPAVPAASAPRALTSRAPAGPSRPTTTRNAAPAPRTAV 294


>U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 369 SPPSRASAWRAGFPTEPDYDDDGVNCGGMWHQWS--YNRGRCGICGDR*TRRH 521
           +P  R +      P  P +  D  N     + WS  + + RC +CGD  T  H
Sbjct: 64  TPYDRTNTPMTVVPQMPQFAPDFSNYNLTMNAWSEFFKKDRCMVCGDNSTGYH 116


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 369 SPPSRASAWRAGFPTEPDYDDDGVNCGGMWHQWS--YNRGRCGICGDR*TRRH 521
           +P  R +      P  P +  D  N     + WS  + + RC +CGD  T  H
Sbjct: 179 TPYDRTNTPMTVVPQMPQFAPDFSNYNLTMNAWSEFFKKDRCMVCGDNSTGYH 231


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 369 SPPSRASAWRAGFPTEPDYDDDGVNCGGMWHQWS--YNRGRCGICGDR*TRRH 521
           +P  R +      P  P +  D  N     + WS  + + RC +CGD  T  H
Sbjct: 175 TPYDRTNTPMTVVPQMPQFAPDFSNYNLTMNAWSEFFKKDRCMVCGDNSTGYH 227


>AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 2 protein.
          Length = 359

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +3

Query: 369 SPPSRASAWRAGFPTEPDYDDDGVNCGGMWHQWS--YNRGRCGICGDR*TRRH 521
           +P  R +      P  P +  D  N     + WS  + + RC +CGD  T  H
Sbjct: 64  TPYDRTNTPMTVVPQMPQFAPDFSNYNLTMNAWSEFFKKDRCMVCGDNSTGYH 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,407,633
Number of Sequences: 27780
Number of extensions: 288735
Number of successful extensions: 836
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)