Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0046
         (635 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    27   0.15 
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   2.5  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.3  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   7.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.6  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 276 KKQTLEIPKQNITNVNSSNDIKLKKNIVHFFNSNRIV 166
           ++Q LE+  QN   +     +K+K+ + HF  SN+ V
Sbjct: 335 QRQNLEMVAQNDRTLQMIAGMKIKEELPHFVGSNKPV 371


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 459 HQWSYNRGRCGICGDR*TRRH 521
           H  S ++  C ICGDR + +H
Sbjct: 101 HPLSGSKHLCSICGDRASGKH 121


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 459 HQWSYNRGRCGICGDR*TRRH 521
           H  S ++  C ICGDR + +H
Sbjct: 101 HPLSGSKHLCSICGDRASGKH 121


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 191 TFSIQIVSY*NAGPKYILLYTK*LNANVL 105
           +F+ Q++   NA  +  LLY   ++ANV+
Sbjct: 216 SFTQQLIEMKNAQARVYLLYASKMDANVI 244


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/20 (45%), Positives = 10/20 (50%), Gaps = 1/20 (5%)
 Frame = +1

Query: 301 RCGLHSS-SWYRCWRPSKPT 357
           RC   S   W+  WR S PT
Sbjct: 22  RCSAASGLRWFEIWRDSLPT 41


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -3

Query: 108 SEQ*IRERNDFKYRQNYRIVYILYNI 31
           S + I   N++KY  N     + YNI
Sbjct: 86  SNKTIHNNNNYKYNYNNNCKKLYYNI 111


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 385 HRPGVPVSPQNQTMTTTAST 444
           H PG P +      TTT +T
Sbjct: 649 HEPGAPATTITTITTTTTTT 668


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,569
Number of Sequences: 438
Number of extensions: 3656
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)