Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0046
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong...    29   3.4  
At4g12080.1 68417.m01920 DNA-binding family protein contains a A...    27   7.9  

>At5g54960.1 68418.m06845 pyruvate decarboxylase, putative strong
           similarity to pyruvate decarboxylase 1 [Vitis vinifera]
           GI:10732644; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 607

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 500 GSVDAPTPRPHELGGRYGDGIIVAHYNPGAIFTTTVHLTTSHLG 631
           GS+DA  P  H++GG    G+     N   + +TTV    + LG
Sbjct: 6   GSIDACNPTNHDIGGPPNGGVSTVQ-NTSPLHSTTVSPCDATLG 48


>At4g12080.1 68417.m01920 DNA-binding family protein contains a AT
           hook motif (DNA binding motifs with a preference for A/T
           rich regions), Pfam:PF02178
          Length = 356

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 376 PRAHRPGVPVSPQNQTMTTTASTAAECGISGAII 477
           P +H    P   Q  T+TTT +TAA  GISG ++
Sbjct: 56  PSSHHTAPPPL-QISTVTTTTTTAAMEGISGGLM 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,469,678
Number of Sequences: 28952
Number of extensions: 262096
Number of successful extensions: 667
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)