Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0045
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    27   1.3  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   5.4  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   7.2  

>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +3

Query: 6   SGRPAASRITLKNSD*LQIKADKRRPRKIFVEKLKPVFISKHYRFEF 146
           SGRP    +   N D  +       P ++FV  + P+  S+  R+ F
Sbjct: 68  SGRPFLKSLQTINYDYNENSLGPEPPTQVFVSNISPLVTSEQLRYHF 114


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 533 TIYYLIGRCYWDFTPCQF*IHIVLFCNPILSTKICHVRSRTPGSIMLFINNLSSLKIKHA 354
           T Y ++G     F P +    ++  C+P  ST +C        +I+LF + L  L +  A
Sbjct: 342 TAYAILGESELLFNPMELFPQVINSCSPSSSTVLCETTFWVT-AIVLFTSALLGLLLTSA 400


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 13  GRLLRGSHSRIQTNYKLKPTKEGQGRFLWK 102
           G  L GS++  + N KL P ++ +G + W+
Sbjct: 165 GPALPGSYTIPEPNPKLSPFRDAKGNYDWQ 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,199,813
Number of Sequences: 5004
Number of extensions: 43308
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)