Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0045
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0254 - 1938343-1938447,1938545-1938700,1939209-1939472,193...    28   4.1  
05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112...    27   7.2  

>05_01_0254 -
           1938343-1938447,1938545-1938700,1939209-1939472,
           1939563-1939777,1939863-1940672,1941758-1942388
          Length = 726

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 441 NENLSCPIQNSGINNVVYQQLIESKDKARRKSTQVTSRVKRGK 313
           N+ LS  I +S +  +    L E KDK + K+ + TSRV + K
Sbjct: 271 NDMLSSCISDSIVKQLEDVVLEEKKDKKKNKAAKGTSRVGKSK 313


>05_06_0212 +
           26410330-26410419,26410562-26410846,26411005-26411208,
           26411636-26411692,26411859-26412926
          Length = 567

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +1

Query: 1   ARVAGRLLRGSHSRIQTNYKLKPTKEGQG-RFLWK 102
           A V GR +R S + IQ N+KL   + G G R  WK
Sbjct: 167 ALVRGRNVRLSTNTIQVNWKLVQQQSGSGKRDAWK 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,873,999
Number of Sequences: 37544
Number of extensions: 229324
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)