Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0045
         (538 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7514| Best HMM Match : OATP (HMM E-Value=0)                         30   1.4  
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)                  29   1.8  
SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  

>SB_7514| Best HMM Match : OATP (HMM E-Value=0)
          Length = 763

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +2

Query: 191 SHFTKKTKSLFAKINYTQKTLSCCNRHLVLPSCV 292
           SH    TKSL + + Y   T++CC    V+   V
Sbjct: 390 SHLPLATKSLLSNVTYVSATIACCLEAFVISGFV 423


>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
          Length = 941

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 17/42 (40%), Positives = 20/42 (47%)
 Frame = +2

Query: 17  GCFADHTQEFRLTTN*SRQKKAKEDFCGKVKTGFYFETLQIR 142
           G + D TQ    T   S     KE FCG+ KTG Y E   +R
Sbjct: 424 GAYLDGTQ-LSFTRGPSFDVPIKEPFCGRGKTGTYNERHDVR 464


>SB_35425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 996

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -2

Query: 510 VLLGFYSLPILNTYCVVL*SNIINENLSCPIQNSGINN 397
           +   F +L ++NTYC  L + ++ +N+  PI  SG+ +
Sbjct: 663 IFFAFMALILVNTYCANLTAFLLEDNVVLPI--SGVED 698


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,652,787
Number of Sequences: 59808
Number of extensions: 288902
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)