Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0045
         (538 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.    28   4.9  
U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical ...    27   8.6  

>Z96047-6|CAB09416.1|  922|Caenorhabditis elegans Hypothetical
           protein DY3.7 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 22  LRGSHSRIQTNYKLKPTKEGQGRFLWKS*NRFLFRNITDSNFFNIN 159
           ++G H  IQ      P    +GR    S N F   N+  SNF N+N
Sbjct: 297 IKGLHFVIQRTSIYTPDSCDRGRAKTDSDNPFCEENVDVSNFLNLN 342


>AF024614-1|AAB97161.1|  922|Caenorhabditis elegans ADAM 10 protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +1

Query: 22  LRGSHSRIQTNYKLKPTKEGQGRFLWKS*NRFLFRNITDSNFFNIN 159
           ++G H  IQ      P    +GR    S N F   N+  SNF N+N
Sbjct: 297 IKGLHFVIQRTSIYTPDSCDRGRAKTDSDNPFCEENVDVSNFLNLN 342


>U00055-4|AAA50720.2|  431|Caenorhabditis elegans Hypothetical
           protein R02F2.4 protein.
          Length = 431

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 527 YYLIGRCYWDFTPCQF*IHIVLFC 456
           Y+  GRC   F+ C   I IV+FC
Sbjct: 245 YFSFGRCSSSFSACTNGIPIVMFC 268


>AF003146-2|AAB54201.1|  228|Caenorhabditis elegans Hypothetical
           protein F56F4.4 protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 188 TSHFTKKTKSLFAKINYTQKTLSC 259
           ++HF +K K L    NY+QK L C
Sbjct: 14  SNHFNEKFKLLIFHNNYSQKRLDC 37


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,985,060
Number of Sequences: 27780
Number of extensions: 234641
Number of successful extensions: 456
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 456
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)