Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0045
         (538 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21540.1 68417.m03112 diacylglycerol kinase family protein co...    30   0.85 
At2g24650.1 68415.m02944 transcriptional factor B3 family protei...    30   0.85 

>At4g21540.1 68417.m03112 diacylglycerol kinase family protein
            contains INTERPRO domain, IPR001206, DAG-kinase catalytic
            domain
          Length = 1240

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 72   KRRPRKIFVEKLKPVFISKHYRFEFLQHKFNLSCK 176
            K+  RKIF E++KP+F   + + E  + K+ L  K
Sbjct: 920  KKTARKIFQEEVKPLFEDANIQLEIQETKYQLHAK 954



 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 72  KRRPRKIFVEKLKPVFISKHYRFEFLQHKFNLSCK 176
           K+  R+IFV+++KP+F     + E  + K+ L  K
Sbjct: 390 KKSAREIFVKEVKPLFEDADVQLEIQETKYQLHAK 424


>At2g24650.1 68415.m02944 transcriptional factor B3 family protein low
            similarity to reproductive meristem gene 1 from [Brassica
            oleracea var. botrytis] GI:3170424, [Arabidopsis
            thaliana] GI:13604227; contains Pfam profile PF02362: B3
            DNA binding domain
          Length = 1440

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
 Frame = +1

Query: 31   SHSRIQTNYKLKPTKEGQGRFLWK-----S*NRFLFRNITDSN 144
            SH     N K+   KE +GR +WK     S NRF+  N+T  N
Sbjct: 1304 SHEESSHNEKISRRKEKKGRMIWKASSSPSENRFVTLNLTPYN 1346


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,937
Number of Sequences: 28952
Number of extensions: 208078
Number of successful extensions: 405
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)