Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0041
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...   127   2e-30
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p...    46   7e-06
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    38   0.001
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   4.6  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   4.6  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    26   4.6  
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...    26   6.1  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    26   6.1  
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|...    25   8.0  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   8.0  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    25   8.0  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score =  127 bits (306), Expect = 2e-30
 Identities = 61/79 (77%), Positives = 68/79 (86%)
 Frame = +1

Query: 277 RLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPID 456
           RLVLEVAQH+GENTVRTIAMDGTEGLVRG  V+D+GSPI IPVG  TLGRI+NVIGEP+D
Sbjct: 91  RLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVD 150

Query: 457 ERGPIPTDKTAAIHAEAQS 513
           ERGPI   K + IHA+A S
Sbjct: 151 ERGPIKAVKYSPIHADAPS 169



 Score = 74.9 bits (176), Expect = 1e-14
 Identities = 39/65 (60%), Positives = 43/65 (66%)
 Frame = +3

Query: 513 FVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGLVWAKLY*LWN*STMLPKAHCGYSV 692
           F + S   EIL TGIKVVDLLAPYA+GGKIGLFGG    K   +      + KAH GYSV
Sbjct: 170 FEEQSTTPEILETGIKVVDLLAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSV 229

Query: 693 FAGVG 707
           F GVG
Sbjct: 230 FTGVG 234



 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +2

Query: 212 DVQFED--NLPPILNALRCKI 268
           D QFED  +LP ILNAL  K+
Sbjct: 66  DCQFEDADSLPSILNALEVKL 86


>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 45.6 bits (103), Expect = 7e-06
 Identities = 25/76 (32%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +1

Query: 292 VAQHLGENTVRTIAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 468
           +A +L  +TV  +   G + LVR G+ V  +   + +PVG   LGR+++ +G PID +GP
Sbjct: 90  MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148

Query: 469 IPTDKTAAIHAEAQSL 516
           I T +   +  +A  +
Sbjct: 149 IKTTERRRVQLKAPGI 164


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/63 (42%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +1

Query: 283 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 459
           VLEVA H     V     +GT G+ VR   +  +G  +RIPV  + LGR+ N  G PID 
Sbjct: 63  VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPID- 117

Query: 460 RGP 468
           +GP
Sbjct: 118 KGP 120


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -3

Query: 467 GPRSSIGSPITLMMRPRVSA-PTGIRIGEPESSTGCPRTKPSVPSM 333
           G R++ G+P  +    R+++ PT I    PES       K S PS+
Sbjct: 154 GKRTAPGNPWAIRSAERLASNPTSIGTSSPESIDNNSNNKKSAPSL 199


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1374

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 557 KSRRSARSLCQRRKDWVVWRTGVGKTVLIMELI 655
           K ++   ++  ++   +V RTG GKT+L ++LI
Sbjct: 14  KYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLI 46


>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
 Frame = -2

Query: 615 RQTTQSFLLWHKERADRRLLYQLRESPAAQTCR----QTLSFSMNSSSLVGGDGTTLVNR 448
           + T  ++ L  K+  D    +   E+P  +T      +TL FS++   L   D  T V  
Sbjct: 242 KDTVLAYALSLKQSFDDDRYHDEDETPVTKTISLNDVRTLFFSLSGKLLRLDDVQTPV-L 300

Query: 447 FADYIDDATEGFSSHRDTNW 388
              Y DD TE  S+   +NW
Sbjct: 301 LLKYADDETEYSSNTAPSNW 320


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 93  NPFQNVEKSLQSMPLTRGTMLLNLQEKAKVRLLPLSV 203
           NPF N ++S+++MP      L+NLQE + +   P S+
Sbjct: 115 NPFPNGKQSIKAMP-----SLVNLQEDSVISKFPNSL 146


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/86 (22%), Positives = 39/86 (45%)
 Frame = +2

Query: 440 SANRLTSVVPSPPTRLLLFMLKLRVCRHVCAAGDSRNWYKSRRSARSLCQRRKDWVVWRT 619
           S ++ T V+P+    ++LF       +     G+     K R+      +++K+ +V + 
Sbjct: 55  SLSKYTCVLPASIPEMILFTFSSHTFQTPTKKGNKTK--KKRKK-----EKKKETIVEKN 107

Query: 620 GVGKTVLIMELINNVAKSPLWLLCVC 697
            V K+  + + INN   +   L+C C
Sbjct: 108 KVLKSFALYKKINNYRSTRCVLVCQC 133


>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 343 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 459
           T GL  G PV  +G P+ + +G      I + I  P+ +
Sbjct: 77  TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = -3

Query: 635 QFCPHQSAKQPNLSSFGIRSEQIDDFYTSYENLLLHRHVDK 513
           + CP       NLS + I+S++I +    Y++ L    +D+
Sbjct: 187 KICPDLVVIPLNLSEYAIKSKEIQNVLAQYDSNLCPASIDE 227


>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -2

Query: 672 LLATLLISSIINTVLPTPVRQTTQSFLLWHKERADRRLLYQLRESPAAQTCRQTLSFSMN 493
           LL  L    I+NT  P P+ +  +  L++ K+     L+Y++      +   + L F  +
Sbjct: 74  LLNPLFTFFILNTNFPIPIFKNIKEDLMYSKKLQVLLLIYEIH---TLRRLYENLRFRKS 130

Query: 492 SSSLVGG 472
            S ++ G
Sbjct: 131 GSKMLAG 137


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 407 PTGIRIGEPESSTGCPRTKPSVPSMAMV 324
           P G  +G PES+      KPS PS + +
Sbjct: 795 PLGHALGNPESNNSSNSFKPSHPSQSFL 822


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
 Frame = -2

Query: 663  TLLISSIINTVLPTPVRQTTQSFLLWHKERADRRLLYQLRE---SPAAQTCRQTLSFSMN 493
            TL  +SI+N +  + V+  + S  +W+K       L +L +   S      ++ +  ++ 
Sbjct: 972  TLESTSIVNEIEESAVQTKSYSESMWNKTVTMFPSLQELPQNYMSEVPSMMQKAMLSTLK 1031

Query: 492  SSSLVGGDGTTLVNRFADYIDDATEGFSSHRDT 394
            S S +  D     + FAD  D   +  SS RD+
Sbjct: 1032 SISAIPDDVPPPYSEFAD--DTTAQAGSSKRDS 1062


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,119,218
Number of Sequences: 5004
Number of extensions: 66902
Number of successful extensions: 231
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)