Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0041
         (709 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)               151   5e-37
SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 64   8e-11
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   2e-04
SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            30   2.1  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 28   8.5  
SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score =  151 bits (366), Expect = 5e-37
 Identities = 70/84 (83%), Positives = 77/84 (91%)
 Frame = +1

Query: 256 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 435
           EV+NR+PRL+LEVAQHLGENTVRTIAMDGTEGL+RGQ  +D+G PI IPVG ETLGRIIN
Sbjct: 100 EVENRTPRLILEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGGPITIPVGPETLGRIIN 159

Query: 436 VIGEPIDERGPIPTDKTAAIHAEA 507
           VIGEPIDERGP+ TDK AAIHAEA
Sbjct: 160 VIGEPIDERGPVETDKRAAIHAEA 183



 Score = 87.8 bits (208), Expect = 8e-18
 Identities = 45/66 (68%), Positives = 49/66 (74%)
 Frame = +3

Query: 510 EFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGLVWAKLY*LWN*STMLPKAHCGYS 689
           EFV+MS +QEIL TGIKVVDLLAPYAKGGKIGLFGG    K   +      + KAH GYS
Sbjct: 185 EFVEMSTEQEILETGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 244

Query: 690 VFAGVG 707
           VFAGVG
Sbjct: 245 VFAGVG 250



 Score = 31.1 bits (67), Expect = 0.92
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 212 DVQFEDNLPPILNALRCKIDLP 277
           DVQF+++LPPILNAL  +   P
Sbjct: 85  DVQFDEDLPPILNALEVENRTP 106


>SB_12284| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 238

 Score = 64.5 bits (150), Expect = 8e-11
 Identities = 32/56 (57%), Positives = 37/56 (66%)
 Frame = +3

Query: 540 ILVTGIKVVDLLAPYAKGGKIGLFGGLVWAKLY*LWN*STMLPKAHCGYSVFAGVG 707
           +L TGIKV+DL+ PYAKGGKIGLFGG    K   +      + K H G SVFAGVG
Sbjct: 2   VLFTGIKVIDLIEPYAKGGKIGLFGGAGVGKTVLIQELINNIAKGHGGLSVFAGVG 57


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
 Frame = +1

Query: 328 IAMDGTEGLVR-GQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGP 468
           + + G + L++ G  V  +G+ + +PVG E LGR+++ +G PID +GP
Sbjct: 12  VVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGKGP 59


>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 446 SPITLMMRPRV-SAPTGIRIGEPESSTG 366
           S +T   +P   SAPTGI  G+P SSTG
Sbjct: 112 STLTAFGQPSTTSAPTGISFGQPTSSTG 139


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/77 (31%), Positives = 29/77 (37%)
 Frame = -3

Query: 467 GPRSSIGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFSPKCWATS 288
           GP SS+  P T    P    PTG+ +  P S    P   P  P M       SP     +
Sbjct: 684 GPPSSMSGPTTSRHGP---PPTGLTMNPPTSMGMAPMMPPPGPGMGTHPQQVSP---GQT 737

Query: 287 STRRGDRFCTSGHLESE 237
           S    D F   G +E E
Sbjct: 738 SILADDGFSGVGFVEQE 754


>SB_12626| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 363

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 382 GSPIRIPVGAETLGRIINVIGEPIDERGPIPT 477
           G PI  P+G   +GR I  IG PI   GPI T
Sbjct: 283 GRPIGRPIGL--IGRPIGPIGRPIGPIGPIGT 312


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
 Frame = -2

Query: 657 LISSIINTVL--PTPVRQTTQSFLLWHKERADRRLLYQLR--ESPAAQTCRQTLSFSMNS 490
           L  S+ N V+    P+ Q +Q   L   + +    + QL+         CR+TL  S+NS
Sbjct: 454 LSESVRNNVVFQVVPLHQVSQVDTLTRSKDSSLTFIMQLKCLAFSVFSRCRKTLQLSLNS 513

Query: 489 SSLVG 475
            SL G
Sbjct: 514 RSLTG 518


>SB_24994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1122

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +1

Query: 361 GQPVLDSGSPIRIPVGAETL--GRIINVIGEPIDERGP 468
           GQP  D+G P     G   +  G+++N  GEP++  GP
Sbjct: 94  GQPANDTGQPSS-NAGQPLINTGQLVNNTGEPVNNTGP 130


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,746,848
Number of Sequences: 59808
Number of extensions: 524597
Number of successful extensions: 1467
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1433
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)