Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0041
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...   140   1e-33
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    46   4e-05
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    46   4e-05
U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...    37   0.012
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...    32   0.35 
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    32   0.46 
Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam ...    29   4.3  
AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score =  140 bits (338), Expect = 1e-33
 Identities = 66/84 (78%), Positives = 73/84 (86%)
 Frame = +1

Query: 256 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 435
           EV  RSPRL+LEV+QHLG+N VR IAMDGTEGLVRGQPV D+G PI+IPVG ETLGRI+N
Sbjct: 96  EVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETLGRIMN 155

Query: 436 VIGEPIDERGPIPTDKTAAIHAEA 507
           VIGEPIDERGPI +   AAIHAEA
Sbjct: 156 VIGEPIDERGPIASKNFAAIHAEA 179



 Score = 91.9 bits (218), Expect = 4e-19
 Identities = 47/66 (71%), Positives = 51/66 (77%)
 Frame = +3

Query: 510 EFVDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGLVWAKLY*LWN*STMLPKAHCGYS 689
           EFV+MSV+QEILVTGIKVVDLLAPYAKGGKIGLFGG    K   +      + KAH GYS
Sbjct: 181 EFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYS 240

Query: 690 VFAGVG 707
           VFAGVG
Sbjct: 241 VFAGVG 246



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +2

Query: 212 DVQFEDNLPPILNAL 256
           DVQF++NLPPILN L
Sbjct: 81  DVQFDENLPPILNGL 95


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +1

Query: 292 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 63  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 122

Query: 472 PTDKTAAIHAEAQSL 516
              + + +  +A  +
Sbjct: 123 ANARRSRVEVKAPGI 137


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/75 (26%), Positives = 40/75 (53%)
 Frame = +1

Query: 292 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
           +A +L  + V  +     + +  G  V  +G+ + +PVG   LGR+++ +G PID +GPI
Sbjct: 90  MAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKGPI 149

Query: 472 PTDKTAAIHAEAQSL 516
              + + +  +A  +
Sbjct: 150 ANARRSRVEVKAPGI 164


>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score = 37.1 bits (82), Expect = 0.012
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
 Frame = +1

Query: 253 PEVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRI 429
           P+   RS + VLE+++    N       +GT G+     + + +G  +R PV  + LGRI
Sbjct: 59  PDGSKRSGQ-VLEISK----NKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRI 113

Query: 430 INVIGEPIDERGPI 471
            N  G+PID+  P+
Sbjct: 114 FNGSGKPIDKGPPV 127


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 379 SGSPIRIPVGAETLGRIINVIGEPIDERGPI-PTD 480
           +G   R PV  + LGRI N  G+PID+  P+ P D
Sbjct: 109 TGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPED 143


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 343 TEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDE 459
           T G+  G PVL +G P+ + +G   +G I + I  P+ +
Sbjct: 59  TSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPLKD 97


>Z70684-5|CAA94600.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.5 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 622 CGQNCIDYGTDQQCCQ 669
           C   C+ Y TDQ+CC+
Sbjct: 168 CKSGCLGYNTDQECCR 183


>Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.3 protein.
          Length = 233

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 622 CGQNCIDYGTDQQCCQ 669
           C   C+ Y TDQ+CC+
Sbjct: 168 CKSGCLGYNTDQECCR 183


>U42830-4|AAC48277.1|  487|Caenorhabditis elegans Neuronal igcam
           protein 3 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 337 DGTEGLVRGQPV-LDSGSPIRIPVGAETLGRIINVIGEPIDE 459
           D  +G + G+P+ +D G  ++ P G E + ++ N  GEP+DE
Sbjct: 152 DTVKGALLGEPITIDCG--VKGPSGKEPMIQMTNGNGEPLDE 191


>AL110484-8|CAB54399.1|  274|Caenorhabditis elegans Hypothetical
           protein Y38E10A.8 protein.
          Length = 274

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 512 VCRHVCAAGDSRNWYKSRRSARSL-CQRRKDWV 607
           +C  +C     ++W K  R+ARS      KDW+
Sbjct: 96  ICMELCEQNTLKDWIKGNRTARSRPWMLMKDWI 128


>Z71266-8|CAA95846.2|  729|Caenorhabditis elegans Hypothetical
           protein R06C7.9 protein.
          Length = 729

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 493 IHAEAQSLSTCLCSRRFS*LV*KSSICSLLMPKEERLGCLADWCGQNCIDYGT-DQQCCQ 669
           IH     L+  +C+++F+ L   SSI   +  +     C    CG+NCID  T D+  C 
Sbjct: 487 IHGLTAMLTCGVCTKKFNTL---SSIRRHMSMEYSIFRC--QQCGRNCIDRTTLDRHECF 541

Query: 670 KP 675
           KP
Sbjct: 542 KP 543


>Z78418-3|CAB01697.1|  932|Caenorhabditis elegans Hypothetical
           protein F25D7.4 protein.
          Length = 932

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -3

Query: 452 IGSPITLMMRPRVSAPTGIRIGEPESSTGCPRTKPSVPSMAMVRTVFS 309
           +G P   + RP    P+        S+TG  RT+P+VP+++  R + S
Sbjct: 284 LGIPAPAVPRPVAGKPST----RSASTTGAARTRPAVPAVSAPRALTS 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,894
Number of Sequences: 27780
Number of extensions: 395321
Number of successful extensions: 1108
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)