Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0041
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 121 5e-28
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 121 5e-28
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 121 5e-28
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 42 5e-04
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 35 0.046
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 35 0.046
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 35 0.061
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 35 0.061
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 35 0.061
At1g03260.1 68414.m00304 expressed protein 32 0.43
At4g34340.1 68417.m04880 expressed protein 29 3.0
At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein ... 27 9.2
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 121 bits (291), Expect = 5e-28
Identities = 57/87 (65%), Positives = 70/87 (80%)
Frame = +1
Query: 256 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 435
EVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+N
Sbjct: 112 EVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171
Query: 436 VIGEPIDERGPIPTDKTAAIHAEAQSL 516
V+GEPIDERG I T+ IH +A +L
Sbjct: 172 VLGEPIDERGEIKTEHYLPIHRDAPAL 198
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/64 (60%), Positives = 45/64 (70%)
Frame = +3
Query: 516 VDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGLVWAKLY*LWN*STMLPKAHCGYSVF 695
VD++ QEIL TGIKVVDLLAPY +GGKIGLFGG K + + KAH G+SVF
Sbjct: 199 VDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 258
Query: 696 AGVG 707
AGVG
Sbjct: 259 AGVG 262
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 121 bits (291), Expect = 5e-28
Identities = 57/87 (65%), Positives = 70/87 (80%)
Frame = +1
Query: 256 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 435
EVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+N
Sbjct: 115 EVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 174
Query: 436 VIGEPIDERGPIPTDKTAAIHAEAQSL 516
V+GEPIDERG I T+ IH +A +L
Sbjct: 175 VLGEPIDERGEIKTEHYLPIHRDAPAL 201
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/64 (60%), Positives = 45/64 (70%)
Frame = +3
Query: 516 VDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGLVWAKLY*LWN*STMLPKAHCGYSVF 695
VD++ QEIL TGIKVVDLLAPY +GGKIGLFGG K + + KAH G+SVF
Sbjct: 202 VDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 261
Query: 696 AGVG 707
AGVG
Sbjct: 262 AGVG 265
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 121 bits (291), Expect = 5e-28
Identities = 57/87 (65%), Positives = 70/87 (80%)
Frame = +1
Query: 256 EVQNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIIN 435
EVQ+ RLVLEV+ HLG+N VRTIAMDGTEGLVRG+ VL++G+PI +PVG TLGRI+N
Sbjct: 112 EVQDHPTRLVLEVSHHLGQNVVRTIAMDGTEGLVRGRKVLNTGAPITVPVGRATLGRIMN 171
Query: 436 VIGEPIDERGPIPTDKTAAIHAEAQSL 516
V+GEPIDERG I T+ IH +A +L
Sbjct: 172 VLGEPIDERGEIKTEHYLPIHRDAPAL 198
Score = 77.0 bits (181), Expect = 1e-14
Identities = 39/64 (60%), Positives = 45/64 (70%)
Frame = +3
Query: 516 VDMSVQQEILVTGIKVVDLLAPYAKGGKIGLFGGLVWAKLY*LWN*STMLPKAHCGYSVF 695
VD++ QEIL TGIKVVDLLAPY +GGKIGLFGG K + + KAH G+SVF
Sbjct: 199 VDLATGQEILATGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVF 258
Query: 696 AGVG 707
AGVG
Sbjct: 259 AGVG 262
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 41.5 bits (93), Expect = 5e-04
Identities = 19/75 (25%), Positives = 36/75 (48%)
Frame = +1
Query: 292 VAQHLGENTVRTIAMDGTEGLVRGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
+A +L V + G + G V +GS + +P G LGR+++ +G PID +G +
Sbjct: 334 MALNLENENVGIVVFGGDTAIKEGDLVKRTGSIVDVPAGKAMLGRVVDAMGVPIDGKGAL 393
Query: 472 PTDKTAAIHAEAQSL 516
+ + +A +
Sbjct: 394 SDHEQRRVEVKAPGI 408
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 534 QEILVTGIKVVDLLAPYAKGGKIGLF 611
+E++ TGI +D++ A+G KI LF
Sbjct: 140 EEMIQTGISTIDVMNSIARGQKIPLF 165
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 35.1 bits (77), Expect = 0.046
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GENTVRTIAMDGTEGLVRGQPVLD-SGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
GE V + +GT G+ + +G ++ PV + LGRI N G+PID PI
Sbjct: 64 GEKAVVQV-FEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 118
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 534 QEILVTGIKVVDLLAPYAKGGKIGLF 611
+E++ TGI +D++ A+G KI LF
Sbjct: 140 EEMIQTGISTIDVMNSIARGQKIPLF 165
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 34.7 bits (76), Expect = 0.061
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 534 QEILVTGIKVVDLLAPYAKGGKIGLF 611
+E++ TGI +D++ A+G KI LF
Sbjct: 139 EEMIQTGISTIDVMNSIARGQKIPLF 164
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 34.7 bits (76), Expect = 0.061
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 534 QEILVTGIKVVDLLAPYAKGGKIGLF 611
+E++ TGI +D++ A+G KI LF
Sbjct: 139 EEMIQTGISTIDVMNSIARGQKIPLF 164
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 34.7 bits (76), Expect = 0.061
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +1
Query: 307 GENTVRTIAMDGTEGLV-RGQPVLDSGSPIRIPVGAETLGRIINVIGEPIDERGPI 471
GE V + +GT G+ + V +G ++ PV + LGRI N G+PID PI
Sbjct: 63 GEKAVVQV-FEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPI 117
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 534 QEILVTGIKVVDLLAPYAKGGKIGLF 611
+E++ TGI +D++ A+G KI LF
Sbjct: 139 EEMIQTGISTIDVMNSIARGQKIPLF 164
>At1g03260.1 68414.m00304 expressed protein
Length = 274
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -2
Query: 693 TQSNHNGLLATLLISSIINTVLPTPVRQTTQSFLLWHKE 577
T S ++ LL+ +I++ V+ PV Q + FLLW KE
Sbjct: 7 TPSTFRIAISLLLLVAIVSAVIFLPVEQKLKDFLLWIKE 45
>At4g34340.1 68417.m04880 expressed protein
Length = 353
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 471 DGTTLVNRFADYIDDATEGFSSHRDTNW 388
DG +++ FA ++ A +GFSS T W
Sbjct: 259 DGLSVIEAFAPAMEAARDGFSSEAHTEW 286
>At2g33640.1 68415.m04124 zinc finger (DHHC type) family protein
contains Pfam profile PF01529: DHHC zinc finger domain
Length = 565
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 424 DRGFQLP-PGYELVSQSLVRVAHGLSLQYRPWQWSELCSHPNVGLPQ 287
D+ Q P P V+ + R + GLS+QYR + LC+ PN+ + Q
Sbjct: 295 DQTSQYPSPASSAVTATSARSSLGLSIQYR---GASLCTPPNIFVDQ 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,804,337
Number of Sequences: 28952
Number of extensions: 374833
Number of successful extensions: 1053
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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