Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0040
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0102 - 735359-735370,735371-735455,735531-735616,735697-73...    30   1.2  
07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967           28   4.7  

>08_01_0102 -
           735359-735370,735371-735455,735531-735616,735697-735779,
           736790-737048,737132-737300,738554-738698,738782-739004
          Length = 353

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +2

Query: 158 VIDVRSAPNYNCV*NLS*QYITCNVVSTPGYLCNVIISFLFSEL*IYLFFFCFSTYFILE 337
           V+  +  P   C+     Q     + S  G  C   IS L S L   +F+FCF T+F++E
Sbjct: 118 VVSDKLGPRQACIFYWMLQLAVGALKSFSGLRC-AWISNLISALASSMFYFCFETWFVVE 176


>07_01_0700 + 5280650-5281757,5282509-5282519,5282872-5282967
          Length = 404

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +2

Query: 242 PGYL-CNVIISFLFSEL*IYLFFFCFSTYFILEGGCCSIFFFEFLAWYLDL 391
           PGYL  N     +F     ++  +CFS    LE GC   F F    W + L
Sbjct: 195 PGYLGWNCTNGVVFKGAAYFILDYCFSDPSFLERGCMPSFDFATEKWSVAL 245


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,461,728
Number of Sequences: 37544
Number of extensions: 184373
Number of successful extensions: 306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)