Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0039
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 29 0.87
SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase Le... 26 4.7
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 4.7
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual 26 4.7
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 26 6.1
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom... 26 6.1
SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c... 26 6.1
SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase |Schi... 26 6.1
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 25 8.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 25 8.1
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo... 25 8.1
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 28.7 bits (61), Expect = 0.87
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 334 LVLKTFCTCFLNCSSVSSTC 275
LVLK +CT F+ + SSTC
Sbjct: 224 LVLKEYCTLFITSKAYSSTC 243
>SPAC1F8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 120
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 337 MLVLKTFCTCFLNCSSVSSTCFLKLMAF 254
+ + TFC CFL+C + S LK +F
Sbjct: 7 LFIFATFCPCFLSCCAFMSHWKLKDFSF 34
>SPBC1A4.02c |leu1|SPBC1E8.07c|3-isopropylmalate dehydrogenase
Leu1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 371
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 222 WHMRGLHNPAPNAINFKKQVLLTEEQFKKHVQKVFK 329
W + PAP + K VL T ++K V K+FK
Sbjct: 175 WLAETSNPPAPVTLLDKANVLATSRLWRKTVAKIFK 210
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 49 KELIMENSGGNMCRCCASEGV 111
+EL+ SG N+C C++ GV
Sbjct: 11 RELVQSVSGNNLCADCSTRGV 31
>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 4.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 3 LNKILLFTDFEWCDR*RTHNGEQW 74
L K+LL TD WC+ +H G Q+
Sbjct: 227 LEKMLLETDAPWCEVRPSHAGHQF 250
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 174 QHVSVYLFFAHPMVSGI 124
+ VS+ + FAHP VSGI
Sbjct: 1380 EKVSISMIFAHPSVSGI 1396
>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +3
Query: 225 HMRGLHNPAPNAINFKKQV--LLTEEQFKKHVQKV 323
++ GL N + + +QV L E+F+ HVQK+
Sbjct: 81 NLDGLDKKEQNMLKYLRQVRDALYSEEFRSHVQKI 115
>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 6.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = -1
Query: 157 PLLRPSNGKWYSSPYTHLQRHNIDTYYRH 71
P + NG WY++PY +H + Y H
Sbjct: 84 PFTKRENGLWYANPY--YMQHGPNGNYHH 110
>SPAC1296.01c ||SPAC22F3.01|phosphoacetylglucosamine mutase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 197 NCTLKQSFNMSPYTSSSPIQW*VVFKSLYTPSEAQHRHILP 75
NCTLK+ + S I+ V +S+YT ++A+ + + P
Sbjct: 448 NCTLKEWNQLYSEIPSRLIRCEVEDRSIYTTTDAEQKLVTP 488
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/37 (27%), Positives = 17/37 (45%)
Frame = -3
Query: 500 RGGALLRLNLIPDCHRLGDVLRLNWNLVEFWFRQSVV 390
RG + +L L P C G+ + L +W+ + V
Sbjct: 228 RGHGISKLGLCPICSHQGEFIWLRTKTSAYWYHMNFV 264
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 218 SELSGTLNCTLKQSFNMSPYTSS 150
SE S TLN LK F+M+ + +S
Sbjct: 1072 SETSKTLNMALKSEFDMTDFNNS 1094
>SPBC56F2.11 |met6||homoserine
O-acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 167 SPYTSSSPIQW*VVFKSLYTP 105
SPY S+SP+ W S+Y P
Sbjct: 110 SPYGSASPVTWNAETHSVYGP 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,559,117
Number of Sequences: 5004
Number of extensions: 49771
Number of successful extensions: 151
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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