Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0039
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0347 + 20479682-20479753,20480136-20480813,20481143-204821...    31   0.91 
10_02_0129 + 5584585-5584732,5586567-5586968,5587038-5587106,558...    28   8.5  

>05_04_0347 +
           20479682-20479753,20480136-20480813,20481143-20482195,
           20482345-20482406,20482491-20482541,20482635-20482719,
           20483253-20483342,20483472-20483563,20483704-20483728
          Length = 735

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +3

Query: 528 SRKVQTQSRPRNVRAGRKNASSSHQERPS*GERKKYIKITPQ 653
           SR    + RP    A RKNA  +   RPS  ER+   + TPQ
Sbjct: 434 SRPSTAERRPITREAARKNADVAILHRPSTAERRPITRETPQ 475


>10_02_0129 +
           5584585-5584732,5586567-5586968,5587038-5587106,
           5587181-5587234,5587309-5588214,5588313-5590283,
           5590833-5591235,5591845-5591857
          Length = 1321

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 540 QTQSRPRNVRAGRKNASSSHQERPS*GERKKYIKITPQDDERDAVNVKLR 689
           Q Q++    RA R+NA+ S +++ S   +    ++TP  DER  +N + R
Sbjct: 67  QRQAKLDRQRAKRQNATPSERQKESARRKAHRQRLTP--DERQELNARRR 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,629,598
Number of Sequences: 37544
Number of extensions: 324899
Number of successful extensions: 890
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)