Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0039
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine re...    29   3.3  
U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AF125963-1|AAD14742.1|  339|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 20 protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 656 VLGRYLNVFFSFSSARPFLM***CIFSSGSHV-SWATLRLNFSTSSYVTCCLD 501
           +LG YLNV  ++ +          IF S   + S+ATL +NF+ + +V C LD
Sbjct: 14  LLGCYLNVLLAYLA----------IFKSPKAIKSYATLIINFAATDFVECALD 56


>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 523 EEVEKFRRRVAQET*EPEEKMHHHHIKKGRAEEK 624
           E+ +K+R R  +E  EP  +  HHH    R EEK
Sbjct: 209 EDRKKYRPRHGEEEEEPSREREHHH---HRGEEK 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,363,400
Number of Sequences: 27780
Number of extensions: 285550
Number of successful extensions: 883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)