Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0038
         (405 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   1.5  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    26   2.6  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    25   5.9  

>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 11  LNTIAYYRWLIFFFSFSNF 67
           L+ I Y+ W  FFFSF ++
Sbjct: 256 LSQINYFLWFFFFFSFPSY 274


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +3

Query: 243 PPNCLRGSTKPSPQLTTLTPKVRAFV--ERRLL 335
           PP+  + S K +  L  L P+++AFV  E+RL+
Sbjct: 103 PPDLAKVSLKETSSLEELPPQLKAFVLLEKRLM 135


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = +3

Query: 234 PRRPPNCLRGSTKPSPQL---TTLTPKVRAFVERRLLCASRSTCTCATAP 374
           PR P   L+G+T+ SP++   +  TP    F + +    S     C+  P
Sbjct: 112 PRSPLTPLKGNTRASPEIRYVSDFTPPSSPFEDMQASVHSLPLSGCSIGP 161


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,343
Number of Sequences: 5004
Number of extensions: 21051
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)