Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0038
         (405 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0328 + 2535049-2535213,2536611-2537777                           29   1.1  
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941...    27   4.3  
04_04_1263 - 32207636-32207938,32208020-32208170,32208263-322085...    27   5.6  
09_04_0285 + 16390786-16391291,16391370-16391957,16392034-163921...    26   9.9  
05_07_0350 - 29457444-29457871,29458786-29461456                       26   9.9  
03_03_0088 + 14354288-14354346,14354512-14354806                       26   9.9  

>12_01_0328 + 2535049-2535213,2536611-2537777
          Length = 443

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 257 AXVDEAFPTADHSHSKGSRVRGAQAALCQPEHVHVCDG 370
           A VD  F    H++ + +RV G     C P HV V DG
Sbjct: 330 ARVDAVFAGHVHAYERFARVYGGGEDACGPVHVTVGDG 367


>04_03_0853 -
           20292734-20292968,20293056-20293144,20293239-20294111,
           20294203-20294364
          Length = 452

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 257 AXVDEAFPTADHSHSKGSRVRGAQAALCQPEHVHVCDG 370
           A VD  F    H++ + +RV   +A  C P H+ + DG
Sbjct: 329 ARVDIVFAGHVHAYERFTRVYNNEANPCGPVHITIGDG 366


>04_04_1263 -
           32207636-32207938,32208020-32208170,32208263-32208500,
           32208604-32208814,32208927-32209108,32209196-32209297,
           32210002-32211187,32212103-32212499,32212551-32212582,
           32212885-32213157,32213307-32213394,32213486-32213723,
           32213824-32214034,32214119-32214300,32214378-32214479,
           32214801-32216224,32216751-32216822,32217688-32217719,
           32218186-32218263,32218425-32218512,32218608-32218845,
           32219060-32219162,32219386-32219558,32219644-32219745,
           32219825-32220606,32220659-32221012,32224055-32224140,
           32224250-32224400,32224534-32224771,32224876-32225119,
           32225190-32225368,32225577-32225675,32225835-32227083
          Length = 3195

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 251 VWWAARXHPIAT*AHCAVFLT*SSGMALKCS 159
           VW A R +PI T +   + +T SSGM L  S
Sbjct: 70  VWVANRDNPITTPSSATLAITNSSGMVLSDS 100


>09_04_0285 +
           16390786-16391291,16391370-16391957,16392034-16392160,
           16392291-16392477,16392585-16392741,16392847-16393201
          Length = 639

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = +1

Query: 148 TINMLHFKAIPEDYVRKTAQCAQVAIGCXRAAHQTACXGRRSLPH 282
           T+ MLH      DY        Q  +   RA  +TA  G + LP+
Sbjct: 511 TVQMLHAIFTFRDYELLNHHLLQTLVEKVRALEETAAAGEKMLPY 555


>05_07_0350 - 29457444-29457871,29458786-29461456
          Length = 1032

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 351 CSGWHRAACAPRTREPLE*EWSA 283
           CS WH   CAP  R  +  + SA
Sbjct: 74  CSSWHAVRCAPDNRTVVSLDLSA 96


>03_03_0088 + 14354288-14354346,14354512-14354806
          Length = 117

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +2

Query: 149 QLTCCILRPSPKTT*GRRHNVLKWRLDAAAPPTKLPAXVDEAFPTADHSHSKGSRVRGAQ 328
           +LTCC   P+       +  +L++ + A  P    P  +  +F    +SH KG  V G +
Sbjct: 17  RLTCC--NPNDPI----KFELLQFCISALWPFDNEPMIL-RSFSPFQYSHLKGVLVTGYK 69

Query: 329 AALCQPEHV-HVCD 367
            A+ QPE + H+ +
Sbjct: 70  GAIEQPEFLAHIAE 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,941,634
Number of Sequences: 37544
Number of extensions: 179982
Number of successful extensions: 602
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 706675332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)